GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001840-TA|BGIBMGA001840-PA|IPR005055|Insect
pheromone-binding protein A10/OS-D
         (65 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1145 - 28000012-28000022,28000119-28000290,28000381-280004...    30   0.27 
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333...    28   0.82 
12_02_0722 - 22521909-22521932,22522291-22522419,22522976-225242...    28   0.82 
12_02_0534 - 20103908-20105897,20106314-20107116                       28   0.82 
04_04_1176 + 31494318-31495685                                         28   0.82 
11_06_0297 + 22056644-22058212,22058316-22058423,22058513-220586...    27   1.4  
05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107           26   3.3  
02_05_0663 + 30713902-30714190,30714645-30715054,30715699-30716580     25   7.6  

>06_03_1145 -
           28000012-28000022,28000119-28000290,28000381-28000488,
           28000578-28002152
          Length = 621

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 13  CTKCTGAQRKGIRRVIKHLIDSEP--GYWDRLVDMYDPKRV---YTGKYEKELRTI 63
           C  C G +   I  +++H+    P  G+W  L  ++DP+ +   Y G +  +  TI
Sbjct: 402 CPYCVGKKIPDIDSLLQHMRSKHPEGGFWTNLRQVFDPESISDTYQGDHFSDNATI 457


>12_02_0723 -
           22532379-22532902,22533060-22533135,22533195-22533380,
           22533459-22534323,22534740-22534918,22535168-22535542
          Length = 734

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 3   THITDALQTGCTKCTGAQRKGIRRVIKH 30
           T+++D  QTG   CT AQ+K IRR+  H
Sbjct: 430 TYLSDGQQTGKHTCT-AQKKKIRRLSLH 456


>12_02_0722 -
           22521909-22521932,22522291-22522419,22522976-22524242,
           22524659-22525461
          Length = 740

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 3   THITDALQTGCTKCTGAQRKGIRRVIKH 30
           T+++D  QTG   CT AQ+K IRR+  H
Sbjct: 514 TYLSDGQQTGKHTCT-AQKKKIRRLSLH 540


>12_02_0534 - 20103908-20105897,20106314-20107116
          Length = 930

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 3   THITDALQTGCTKCTGAQRKGIRRVIKH 30
           T+++D  QTG   CT AQ+K IRR+  H
Sbjct: 524 TYLSDGQQTGKHTCT-AQKKKIRRLSLH 550


>04_04_1176 + 31494318-31495685
          Length = 455

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 18  GAQRKGIRRVIKHLIDSEPGYWDRLVDMYDPKRVYTG 54
           G  + G       L +SE G+W+ L DM  P+R+ +G
Sbjct: 261 GCDKNGQVLKSAELYNSETGHWETLPDMNLPRRLSSG 297


>11_06_0297 +
           22056644-22058212,22058316-22058423,22058513-22058678,
           22059000-22059056,22059382-22059479,22059556-22059765,
           22060469-22060582,22060819-22060948,22061165-22061298,
           22062279-22062359,22062798-22062872,22063210-22063221
          Length = 917

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 13  CTKCTGAQRKGIRRVIKHLIDSEP--GYWDRLVDMYDPKRV 51
           C  C G +      +++H+ +  P  G W +L+ + DPK V
Sbjct: 401 CPYCVGKKIPDTDSLLQHMRNKHPEGGVWLKLLSILDPKSV 441


>05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107
          Length = 662

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 27  VIKHLIDSEPGYWDRLVDMYDPKRV-YTGKYEKELRTIK 64
           ++K LI  EP  W  L+D    KR+  T  +E  L +I+
Sbjct: 306 IMKTLIAMEPSRWSYLMDFLREKRILVTENWEVSLGSIE 344


>02_05_0663 + 30713902-30714190,30714645-30715054,30715699-30716580
          Length = 526

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 10  QTGCTKCTGAQRKGIRRVIKHLIDSEPG 37
           + G T    A R G  R++K LI+ +PG
Sbjct: 149 KNGKTSLHTAARIGYHRIVKALIERDPG 176


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,450
Number of Sequences: 37544
Number of extensions: 59310
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 8
length of query: 65
length of database: 14,793,348
effective HSP length: 45
effective length of query: 20
effective length of database: 13,103,868
effective search space: 262077360
effective search space used: 262077360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)