Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001839-TA|BGIBMGA001839-PA|undefined
(156 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 31 0.060
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 31 0.080
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 30 0.14
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 29 0.24
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 29 0.24
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.24
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 29 0.43
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 29 0.43
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 29 0.43
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 0.74
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 27 0.98
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 27 0.98
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 27 1.3
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 1.3
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 27 1.7
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 26 2.3
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 3.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 4.0
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 4.0
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 25 4.0
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 25 4.0
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 4.0
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 5.2
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 5.2
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 5.2
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 25 5.2
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 25 5.2
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 25 6.9
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 6.9
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 25 6.9
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 6.9
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 25 6.9
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 31.5 bits (68), Expect = 0.060
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 69 KKEMKTVDRKSRRRSRPEKHRHGKVNKRKRSETRRQLVHRVQ-----KRRPKVTRKRDLE 123
++E+K + K ++R + ++ + K +R+R E R Q KR+ + +KR+ +
Sbjct: 585 ERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQ 644
Query: 124 TLIVSAAHGAEALEREK 140
L + LER+K
Sbjct: 645 RLKREQEKKQQELERQK 661
Score = 26.6 bits (56), Expect = 1.7
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 55 DMARVRADVPKPIGKKEMKTVDRKSRRRSRPEKHRHGKVNKRKRSETRRQLVHRVQKRRP 114
++ ++R K KK++K K R R E R + +K E +RQ +K+R
Sbjct: 587 ELKKIREKEKKRDKKKQLKLA--KEEERQRREAERLAEQAAQKALEAKRQ--EEARKKRE 642
Query: 115 KVTRKRDLE 123
+ KR+ E
Sbjct: 643 EQRLKREQE 651
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 31.1 bits (67), Expect = 0.080
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 80 RRRSRPEKHRHGKVNKRKRSETRRQLVHRVQKRRPKVTRKRDLETLIVSAAHGAE 134
+R+ + KH H K K K S + ++ + +K+ K K E++ ++A GA+
Sbjct: 69 KRKEKKSKHEHKKHKKDKPSADKDRISKKDKKKSKKGKSKTKEESIEINAEEGAK 123
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 30.3 bits (65), Expect = 0.14
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 69 KKEMKTVDRKSRRRSRPEKHRHGKVN-KRKRSETRRQLVHRVQKRRPKVTRKRDLETLIV 127
+K + + K++R + + R + N KR+ E ++ KR + KR+ E
Sbjct: 639 EKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEENAK 698
Query: 128 SAAHGAEALEREKNPILKHS 147
A E +KNP +K S
Sbjct: 699 RKAEEEGKREADKNPEIKSS 718
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 29.5 bits (63), Expect = 0.24
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 15 TSKKDSQNENSDHDTREINPNDPGSECSWSLTSYSGVSGLDMARVRADVPKPIGKKEMKT 74
+S D Q S+ D N S SWS +++ +G + R R + +P+ K
Sbjct: 175 SSVDDHQEFESEDDKYRRN-----SYSSWSGSNFESSNGSNRRRYRTQMEEPLSSKRRNR 229
Query: 75 VDRKSRRRSRPEKHRH 90
SRR K+ H
Sbjct: 230 FGNGSRRDVDSSKYSH 245
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.24
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 7 SNKEAEPNT--SKKDSQNENSDHDTREINPND 36
+NKEA PNT +K+ NE D D I P++
Sbjct: 165 NNKEAHPNTEENKEQEDNEEDDEDDGWITPSN 196
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.24
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 37 PGSECSWSLTSYSGVSGLDMARVRADVPKPIGKKEMKTVDRKSRRRSRP-EKHRHGKVNK 95
P S S S TS S S A R V + K E SR+ S+ E H H
Sbjct: 1259 PHSNASPSPTSSSMASA---APARTSVSRSKSKAERHETSTSSRKSSKSGEHHHHHNEGH 1315
Query: 96 RKRSETRRQLVHRVQKR 112
S TR L H+ ++
Sbjct: 1316 ADSSSTRTSLAHQDSRK 1332
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 28.7 bits (61), Expect = 0.43
Identities = 33/139 (23%), Positives = 50/139 (35%), Gaps = 7/139 (5%)
Query: 6 ESNKEAEPNTSKKDSQNENSDHDTREINPNDPGSECSWSLTSYSGVSGLD---MARVRAD 62
E NKE N + NEN DT+ D E + +G S D
Sbjct: 253 EKNKETILNALNNSTLNENGHQDTQNEVLRDIVLEHPTAKAQDTGESNKDNNTSTSKHKK 312
Query: 63 VPKPIGK-KEMKTVDRKSRRR---SRPEKHRHGKVNKRKRSETRRQLVHRVQKRRPKVTR 118
PK + K K+ K +KS + + EK G + +ETR + K+
Sbjct: 313 RPKRLSKFKQAKLETKKSGNKDHATSSEKLSLGNESIHSINETRSSSIEEPDNADNKIVE 372
Query: 119 KRDLETLIVSAAHGAEALE 137
+ + + + A G LE
Sbjct: 373 EEPMLLPVPTTAQGQNVLE 391
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 28.7 bits (61), Expect = 0.43
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 13 PNTSKKDSQNENSDHDTREINPNDPGSECSWSLTSYSGVSGLDMARVRADVPKPIGKKEM 72
P S + + S D+R+I D + S+ + + + R A VPK + KKE
Sbjct: 154 PAVSAVVASADASFDDSRDIESEDEQPLRTLSIEMAAKNALKEAKRENAKVPKDVSKKEA 213
Query: 73 KTVDRKSRRRSRPEKHRHGKVNKRKRSETRRQLV 106
KT ++ + + K V K+ E ++ V
Sbjct: 214 KT----TKSKEKATKKTSSSVPKQSTGENTKKAV 243
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 28.7 bits (61), Expect = 0.43
Identities = 12/52 (23%), Positives = 28/52 (53%)
Query: 70 KEMKTVDRKSRRRSRPEKHRHGKVNKRKRSETRRQLVHRVQKRRPKVTRKRD 121
K+ + + +KS RR EK + K ++ ++ ++ R Q+R + ++R+
Sbjct: 163 KDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRRE 214
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.9 bits (59), Expect = 0.74
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 5 DESNKEAEPNTSKKDSQNENSDHDTREINPNDPGSECSWSLTSYSGVSGLD 55
D S+ E+E ++ DS + +SD ++ + + S S S S G D
Sbjct: 113 DSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSD 163
Score = 25.4 bits (53), Expect = 4.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 7 SNKEAEPNTSKKDSQNENSDHDTREINPNDPGSECSWSLTSYSGVSGLD 55
S+ E+E ++ DS + +SD ++ + + S S S S G D
Sbjct: 169 SSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSD 217
Score = 24.6 bits (51), Expect = 6.9
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 7 SNKEAEPNTSKKDSQNENSDHDTREINPNDPGSECSWSLTSYSGVSGLDMARVRAD 62
S+ E+E ++ DS + +SD ++ + S S S S S D + +D
Sbjct: 133 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSD 188
Score = 24.6 bits (51), Expect = 6.9
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 7 SNKEAEPNTSKKDSQNENSDHDTREINPNDPGSECSWSLTSYSGVSGLDMARVRAD 62
S+ E+E ++ DS + +SD ++ + S S S S S D + +D
Sbjct: 187 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSD 242
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 27.5 bits (58), Expect = 0.98
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 79 SRRRSRPEKHRHGKVNKRKRSETRRQLVHRVQKRRPKVTRKRDLETLI 126
S RRSR + K ++ +R +Q+ R QKR + ++R+L ++
Sbjct: 7 SDRRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVL 54
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 0.98
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 84 RPEK-HRHGKVNKRKRSETRRQLVHRVQKRRPKV--TRKRDLETLIVSAAHGAEALEREK 140
+P+K H GK +KR ++ RR+ + K P T K + T + HG+ A E
Sbjct: 85 KPKKAHGKGKSSKRPKAVDRRRSITAPSKTEPSTPSTEKPEPSTPSGESDHGSNA-GNES 143
Query: 141 NPILK 145
P+L+
Sbjct: 144 LPLLE 148
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 1.3
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 12 EPNTSKKDSQNENSDHDTREINP-NDPGSECSWSLTSYSGVSGLDMA 57
E +SK DSQN++ D+ T ++ +D ++ S S + S DM+
Sbjct: 360 EDTSSKSDSQNQSGDNKTTDLKLFSDESTDASNSAIVAASNSARDMS 406
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 1.3
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 7 SNKE-AEPNTS-KKDSQNENSDHDTREINP--NDPGSECSWSLTSYSGVSGLDMARVRAD 62
SNKE + P S DSQ++N++H + NP N+P S TS + SG + +
Sbjct: 108 SNKEPSSPGISPSNDSQSQNTNHTSISANPYVNNP------SHTSRNPDSGSSLNTASHE 161
Query: 63 VPKPIGKKEMKTVDR-KSRRRSR 84
VP ++ + R KS+ R +
Sbjct: 162 VPSSKSDVNVQMLARLKSKSRQK 184
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 26.6 bits (56), Expect = 1.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 8 NKEAEPNTSKKDSQNENSDHDTREINPNDPGSECS 42
NK AE T ++++ D +TR N +P C+
Sbjct: 602 NKNAEKPTVSNAAEDKKGDANTRRANATNPTPTCT 636
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 76 DRKSRRRSRPEKHRHGKVNKRKRSETRRQLVHRVQKRRP 114
+R SRR ++ + +R R E R+ V RRP
Sbjct: 43 ERSSRRYEDSQRRDYSPARRRDRYERHRESVREESPRRP 81
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 3.0
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 2 GMGDESNKEA----EPNTSKKDSQNENSDHDTRE--INPNDPGSECSWSL--------TS 47
G+G +S K+ E K NEN+ D + I+ +DP +E + T
Sbjct: 356 GLGPQSMKKKTLKKEGKLDKYGRPNENTPADWSKSYIDYSDPNAEVAKPAPVVAPAAPTV 415
Query: 48 YSGVSGLDMARVRADVPKP------IGKKEMKTVDRKSRRRSRPEKHRHGKVNKRKRSE 100
+ V+G++ ++ R V KKE K +++++ + +K + K K+K+SE
Sbjct: 416 EAEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKKSE 474
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 4.0
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 5 DESNKEAEPNTSKKDSQNENSDHDTREINPNDPGSECSWS 44
+ES+ E+E +S +S++ +S+ ++ SE S S
Sbjct: 81 EESSSESESESSSSESESSSSESESSSSESESSSSESSSS 120
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 4.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 5 DESNKEAEPNTSKKDSQNENSDH 27
DE+N++A+ N S + + E S H
Sbjct: 367 DEANEDAQSNVSDESPKGEGSSH 389
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 4.0
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 93 VNKRKRSETRRQLVHRVQKRRPKVTRKRDLETLIVSAAHGAEALEREKN 141
V+ K+++ +++ + Q+++ KVT KRDL+ S E LE KN
Sbjct: 90 VSTNKKAKNKKK--KKKQQKKKKVTGKRDLDNQ-SSDNEKLEGLESSKN 135
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 4.0
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 5 DESNKEAEPNTSKKDSQNENS-DHDTREINPND 36
DE + + E ++SK DS+ E+S + T E + +D
Sbjct: 96 DEESSQQEDSSSKSDSEEESSMEPKTTEYDEDD 128
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 4.0
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 5 DESNKEAEPNTSKKDSQNENSDHDTREIN-PNDPGSECSWSLTSYSGVSGLDMARVRADV 63
D+S + +T+K +N+N+D + +D S LT S +++ D
Sbjct: 487 DKSRAKLSSDTNKDSEKNDNNDASLQSAGVASDGESSPETPLTKASKSKKAKASKLANDT 546
Query: 64 PKPIGKKEMKTVDRKSRRRS 83
K E K+ +KS++++
Sbjct: 547 SKN-ANGETKSTPKKSKKKT 565
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 5.2
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 49 SGVSGLDMARVRADVPKPIGKKEMKTVDRKSRRRSRPEKHRHGKVNKRKRSETRRQL-VH 107
S VS + +V+ V K GK+ K R +S+ +K + K +K K+ R +L
Sbjct: 118 SSVSPVSSKKVK--VRKTSGKESSK------REKSKKKKEKKEKKDKLKKKSKRLKLDDS 169
Query: 108 RVQKRRPKVTRK 119
QKR+ KV K
Sbjct: 170 HTQKRKRKVRDK 181
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 5.2
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Query: 7 SNKEAEPNTSKKDSQNENS---DHDTREINPNDPGSECSWSLT---SYSGVSGLDMAR-V 59
S++E + S K + S + D ++ D + S S S S D A+ +
Sbjct: 849 SHRERSNSVSSKSRETRTSASNESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSI 908
Query: 60 RADVPKPIGKKEMKTVDRKSRRRSRPEKHRHGKVNKRKRSETRRQ 104
+ P+P K T D KS +R+ E + + +RQ
Sbjct: 909 KPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQ 953
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.0 bits (52), Expect = 5.2
Identities = 19/99 (19%), Positives = 38/99 (38%)
Query: 10 EAEPNTSKKDSQNENSDHDTREINPNDPGSECSWSLTSYSGVSGLDMARVRADVPKPIGK 69
E + S+ D + + D + E + ++ E S S + D + + + K
Sbjct: 605 EGQEEVSQDDEEGDFEDLEDEENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARK 664
Query: 70 KEMKTVDRKSRRRSRPEKHRHGKVNKRKRSETRRQLVHR 108
KE + + R PEK + K R+ +++R
Sbjct: 665 KEELRLRFEEEDRGDPEKKDVDWYTEEKEKIARQLVINR 703
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 70 KEMKTVDRKSRRRSRPEKHRHGKVNKRKRSETRRQLVHRVQKRR---PKVTRKRDLE 123
+E +T D KS + R + + KR+ ++ + +KR+ PK +KR L+
Sbjct: 459 EEERTSDSKSSAKQGKGNGRAKETPEEKRARKKKTKEDKAEKRKSKIPKYEKKRKLK 515
Score = 24.6 bits (51), Expect = 6.9
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 22 NENSDHDTREINPNDPGSECSWSLTSYSGVSGLDMARVRADVPKPIGKKEMKTVDRKSRR 81
N+ + + +I PN+ SE S S + + + GK + + +
Sbjct: 428 NDTTKNQNDQILPNET-SESDDDANSISSMENEEERTSDSKSSAKQGKGNGRAKETPEEK 486
Query: 82 RSRPEKHRHGKVNKRK----RSETRRQLVHRVQKR 112
R+R +K + K KRK + E +R+L +K+
Sbjct: 487 RARKKKTKEDKAEKRKSKIPKYEKKRKLKQSGRKK 521
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 92 KVNKRKRSETRRQLVHRVQKRRPKVT 117
K+++RKR RQ V R KRR +T
Sbjct: 320 KLSQRKRDWINRQSVPRASKRRRPLT 345
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 24.6 bits (51), Expect = 6.9
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 6 ESNKEAEPNTSKKDSQNENSDHDTREINPNDPGSECSWSLTSYSGVSGLDMARVRADVPK 65
E+NK+ +T + N D +DP E S T S L+ + A+V
Sbjct: 6 ENNKDESISTKNALEEKSNETKDETSKRKHDPAEEESAVSTKVSKSEPLE-DKGNAEV-- 62
Query: 66 PIGKKEMKTVDRKSRRRSRPEKHRHGKVNKRKRSETRRQLVHRVQKRRPKVTRKRD 121
KE K + + + E K+ K +E +V+++ KV + D
Sbjct: 63 ----KEFKETTKSNGVKPEVEITESTKIQKESNTEPCISTGGKVEEKELKVNKDVD 114
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 24.6 bits (51), Expect = 6.9
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 76 DRKSR-RRSRPEKHRHGKVNKRKRSETRR 103
DRKS+ RR R HR + R+RS+ +
Sbjct: 164 DRKSKERRHRDRHHRSNQDRSRERSDNEQ 192
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 6.9
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 102 RRQLVHRVQKRRPKVTRKRDLETLIVSAAHGAEALEREK 140
R Q V +K++ ++ +DL+ L + HGA+ ERE+
Sbjct: 157 RSQWVREDEKKKKEI---QDLKELYEKSEHGAKNWERER 192
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 24.6 bits (51), Expect = 6.9
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 5 DESNKEAEPNTSKKDSQNENSDHDTREINPNDP-GSECSWSLTSYSGVSGLDMARVRADV 63
DE + N SK N ++D E DP E + S +G D ++
Sbjct: 462 DEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKPIASLPLPNGNDTISRSSES 521
Query: 64 PKPIGKKEMKTV 75
PI + E ++
Sbjct: 522 SSPINESESNSL 533
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 24.6 bits (51), Expect = 6.9
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 4 GDESNKEAEPNTSKKDSQNENSDHDTRE 31
G+ES E E +++ + +D +TRE
Sbjct: 305 GEESASEEEEEEEEEEEEENEADDETRE 332
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.127 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,002
Number of Sequences: 5004
Number of extensions: 29707
Number of successful extensions: 151
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 43
length of query: 156
length of database: 2,362,478
effective HSP length: 67
effective length of query: 89
effective length of database: 2,027,210
effective search space: 180421690
effective search space used: 180421690
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 50 (24.2 bits)
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