Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001838-TA|BGIBMGA001838-PA|IPR006578|MADF
         (361 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18799| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.63 
SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.63 
SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8)           29   4.4  
SB_4274| Best HMM Match : LRV (HMM E-Value=5.7)                        29   4.4  
SB_7556| Best HMM Match : HEAT (HMM E-Value=1.5e-09)                   29   7.8  

>SB_18799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 32.3 bits (70), Expect = 0.63
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 298 ILRKIESLRACVRREYKRVQESRRKANCEEEVYVPNLWYYDLLSFIFKNEAPEPARS 354
           + +K+ESLR    +E  + + SRR  +   +VY     +Y  L F+  N  P    S
Sbjct: 7   VQKKMESLRTYFGKEVGKERSSRRSGSASRDVYRCKWPFYTSLQFLGDNITPRKTAS 63



 Score = 29.5 bits (63), Expect = 4.4
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 139 ILRKIGSLRACVRREYKRVQESRRKATCEEEVYVPNLWYYDLLSFIFKNEAPEPARS 195
           + +K+ SLR    +E  + + SRR  +   +VY     +Y  L F+  N  P    S
Sbjct: 7   VQKKMESLRTYFGKEVGKERSSRRSGSASRDVYRCKWPFYTSLQFLGDNITPRKTAS 63


>SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 32.3 bits (70), Expect = 0.63
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 13/96 (13%)

Query: 248 LKKFILLYKDLPCLWDKECPAYKIKMKRHDAITKMTELVQEYDPSATRVHILRKIESLRA 307
           +++ I L+++ PCLWD     Y  K  R  A  ++ E +       T   +  KI+SLR+
Sbjct: 37  VEQLIDLFEERPCLWDVSNKEYYQKGNRQRAEEEIAEQM-----GITLNDVKSKIKSLRS 91

Query: 308 CVRREYKRVQESRRKANCEEEVYVPNLWYYDLLSFI 343
            + RE  +++ S        E YVP   ++  L F+
Sbjct: 92  QLGREIYKIRTS--------ENYVPIWIFWHKLQFL 119


>SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8)
          Length = 796

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 23  VRQRYSLSICTTYAVRGGAEGCAGVEPPIRSTRLNPTASTFSDLRDAPLDERIDMSDGNV 82
           +R  Y++++   +  RGG E   G E  + S   NP A +F  L    +   + + D  V
Sbjct: 231 LRHPYTIALVERHEHRGGEEVREGYETALASRTTNPLADSFLKLMTKLVGMTLPI-DSVV 289

Query: 83  VFPQKILKKFILLYKDLTC 101
                ++  +I+  + L C
Sbjct: 290 YLHNDLVSDYIINNEPLRC 308


>SB_4274| Best HMM Match : LRV (HMM E-Value=5.7)
          Length = 327

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 251 FILLYKDLPCLWDKECPAYKIKMKRHDAITKMTELVQEYDPSATRVHILRKIESLRACVR 310
           FIL Y+    LW+   P Y    +  D +     L++E     T+  +  K +SL    R
Sbjct: 65  FILFYQTNESLWNHNIPEYHTN-RNKDLLFNC--LIKELKYRYTKQDVEIKWKSLLKFYR 121

Query: 311 REYKRVQESRRKANCEEEVYVPNLWYYDLLSF 342
           +E+++ Q  +      +EVY  +  +Y  L F
Sbjct: 122 QEHEKAQH-KPSGWGTDEVYQSSWEFYTQLQF 152



 Score = 29.1 bits (62), Expect = 5.9
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 92  FILLYKDLTCLWDKECPAYKIKMKRHDAITKMTELVQEYDPSATRVHILRKIGSLRACVR 151
           FIL Y+    LW+   P Y    +  D +     L++E     T+  +  K  SL    R
Sbjct: 65  FILFYQTNESLWNHNIPEYHTN-RNKDLLFNC--LIKELKYRYTKQDVEIKWKSLLKFYR 121

Query: 152 REYKRVQESRRKATCEEEVYVPNLWYYDLLSF 183
           +E+++ Q  +      +EVY  +  +Y  L F
Sbjct: 122 QEHEKAQH-KPSGWGTDEVYQSSWEFYTQLQF 152


>SB_7556| Best HMM Match : HEAT (HMM E-Value=1.5e-09)
          Length = 331

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 120 ITKMTELVQEYDPS-ATRVHILRKIGSLRACVR 151
           I ++ +LV+  DP  ATRVH  R +G L A +R
Sbjct: 127 IYRLLKLVEATDPDEATRVHAQRALGELDAIMR 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,169,916
Number of Sequences: 59808
Number of extensions: 492241
Number of successful extensions: 1088
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 8
length of query: 361
length of database: 16,821,457
effective HSP length: 83
effective length of query: 278
effective length of database: 11,857,393
effective search space: 3296355254
effective search space used: 3296355254
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)