GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001838-TA|BGIBMGA001838-PA|IPR006578|MADF
         (361 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   3.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   4.5  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 238 EENVVFPQKILKKFILL 254
           +E+V+F +K++K F +L
Sbjct: 112 DESVIFERKVMKNFAIL 128



 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 79  DGNVVFPQKILKKFILL 95
           D +V+F +K++K F +L
Sbjct: 112 DESVIFERKVMKNFAIL 128


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 213 DSPNPTASTFSDLRDALLD 231
           DSP+PT+S   +++D+  D
Sbjct: 114 DSPSPTSSVSPEVKDSSRD 132


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,552
Number of Sequences: 317
Number of extensions: 3307
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 361
length of database: 114,650
effective HSP length: 58
effective length of query: 303
effective length of database: 96,264
effective search space: 29167992
effective search space used: 29167992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)