GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001838-TA|BGIBMGA001838-PA|IPR006578|MADF
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    27   3.1  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    27   5.4  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    26   7.2  

>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 47  VEPPIRSTRLNPTASTFSDLRDAPLDERIDMSDGNVVFPQ 86
           V PP + T   P AS  +D+ D P+++ +D+    V+ PQ
Sbjct: 201 VSPPTKFTTTFPRASYGTDVFDKPVNQ-LDLFPSAVLIPQ 239


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 19/71 (26%), Positives = 29/71 (40%)

Query: 23  VRQRYSLSICTTYAVRGGAEGCAGVEPPIRSTRLNPTASTFSDLRDAPLDERIDMSDGNV 82
           + Q  ++   T     GG  G  G E    ST+    AS   D +   +D  +   D + 
Sbjct: 324 MNQHKAIKPDTNLPFYGGIMGIIGYECSDLSTKSVSNASFPLDFQQTTVDAELAFVDRSF 383

Query: 83  VFPQKILKKFI 93
           VF  +I K F+
Sbjct: 384 VFDLEIKKLFV 394


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 99  LTCLWDKECPAYKIKMKRHDAITKMTELVQEYDPSATRVHILRKIGSLRACVRREY 154
           ++  W  E P Y +   RH+ + K+ +++    P A    I  K+  ++  V+ ++
Sbjct: 255 ISLFWTPESPRYLL---RHNHVEKVYKILSRIHPEAKPAEIAYKVSLIQEGVKVDF 307


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,619
Number of Sequences: 5004
Number of extensions: 68845
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 4
length of query: 361
length of database: 2,362,478
effective HSP length: 74
effective length of query: 287
effective length of database: 1,992,182
effective search space: 571756234
effective search space used: 571756234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)