GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001838-TA|BGIBMGA001838-PA|IPR006578|MADF
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0470 + 22531210-22531530,22532423-22532594,22532685-225328...    33   0.47 
06_03_1332 - 29403320-29407804                                         31   1.9  
08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860     30   3.3  

>01_05_0470 +
           22531210-22531530,22532423-22532594,22532685-22532820,
           22532913-22533126,22533295-22533438,22533528-22533635,
           22533724-22533820,22533904-22534035,22534188-22534320,
           22534439-22534604
          Length = 540

 Score = 32.7 bits (71), Expect = 0.47
 Identities = 19/71 (26%), Positives = 30/71 (42%)

Query: 46  GVEPPIRSTRLNPTASTFSDLRDAPLDERIDMSDGNVVFPQKILKKFILLYKDLTCLWDK 105
           GVE  + +   +P+   F D RD   D+      GN  F   +      ++ + TCL  K
Sbjct: 277 GVEVEVENNPYDPSLMVFMDYRDCFKDKFSHPEQGNPTFLYAMPMSSTRIFFEETCLASK 336

Query: 106 ECPAYKIKMKR 116
           E   + +  KR
Sbjct: 337 EAMPFDLLKKR 347


>06_03_1332 - 29403320-29407804
          Length = 1494

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 270 KIKMKRHDAITKMTELVQEYDPSATRVHILRKIESLRACV 309
           K+K  R D  T+M  +V++  P   +V  +  +E L +C+
Sbjct: 202 KLKFDRVDLSTRMKHIVEQLKPVCAKVSTILNLELLESCI 241


>08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860
          Length = 335

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 13/126 (10%)

Query: 44  CAGVEPPIRSTRLNPTASTFSDLRDAPLDERIDMSDGNVVFPQKILK-KFILLYKDLTCL 102
           C  V P     R    A  +SD +     + +DM  G  +F Q IL+  F  L+ D+  +
Sbjct: 119 CRQVHPHCYLLRRPEGAVDYSDEKRFMSKDYLDMMWGRNLFQQTILQLGFNFLFTDIDIM 178

Query: 103 WDKECPAYKIKMKRHDAITKMTELVQEY---DPSATRVHILRKIGSLRACVRRE--YKRV 157
           W +  P       RH AIT    +  +Y   DP + R         +RA  R    Y+R 
Sbjct: 179 WFRN-PL------RHIAITSDIAVANDYYNGDPESLRNRPNGGFLYVRAARRTVDFYRRW 231

Query: 158 QESRRK 163
           +++RR+
Sbjct: 232 RDARRR 237


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,524,097
Number of Sequences: 37544
Number of extensions: 437928
Number of successful extensions: 965
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 5
length of query: 361
length of database: 14,793,348
effective HSP length: 83
effective length of query: 278
effective length of database: 11,677,196
effective search space: 3246260488
effective search space used: 3246260488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)