GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001838-TA|BGIBMGA001838-PA|IPR006578|MADF
         (361 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51720.1 68416.m05671 expressed protein contains Pfam PF05701...    30   2.8  
At5g64940.2 68418.m08169 ABC1 family protein contains Pfam domai...    29   6.4  
At5g64940.1 68418.m08168 ABC1 family protein contains Pfam domai...    29   6.4  
At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical t...    29   6.4  
At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical t...    29   6.4  
At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67, ...    29   6.4  
At5g38410.1 68418.m04643 ribulose bisphosphate carboxylase small...    28   8.4  
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c...    28   8.4  

>At3g51720.1 68416.m05671 expressed protein contains Pfam PF05701:
           Plant protein of unknown function (DUF827)
          Length = 407

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 279 ITKMTELVQEY-DPSATRVHILRKIESLRACVRREYKRVQESRRKANCEEEVY 330
           + K +EL +E  +     + +L+ +ES +A V     ++Q    K NC+  V+
Sbjct: 53  VLKASELEKELIEKEGETLKVLKSLESTKAIVEELKSKIQNKEDKENCDMNVF 105


>At5g64940.2 68418.m08169 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 761

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 253 LLYKDLPCLWDKECPAYKIKMKRHDAITKMTELVQEYDPSATRVHILRKIESLRACVR 310
           ++ KDL   WD++  A+    ++ D + K+  +++  +    ++ + R +ES RA  R
Sbjct: 637 VVVKDLRKRWDRQSQAFYNLFRQADRVEKLAVVIERLEQGDLKLRV-RALESERAFQR 693


>At5g64940.1 68418.m08168 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 761

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 253 LLYKDLPCLWDKECPAYKIKMKRHDAITKMTELVQEYDPSATRVHILRKIESLRACVR 310
           ++ KDL   WD++  A+    ++ D + K+  +++  +    ++ + R +ES RA  R
Sbjct: 637 VVVKDLRKRWDRQSQAFYNLFRQADRVEKLAVVIERLEQGDLKLRV-RALESERAFQR 693


>At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical to
           kinesin-like protein [Arabidopsis thaliana] GI:27260890;
           contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 104 DKECPAYKIKMKRHDAITKMTELVQEYDPSATRVHILRKIGSLRACVRREYKRVQESRRK 163
           DKE   Y++  +  +  ++M +L   YDP+A + H  +KI    A V  E + VQE R +
Sbjct: 508 DKEL--YELNRRLEEKESEM-KLFDGYDPAALKQHFGKKI----AEVEDEKRSVQEERNR 560

Query: 164 ATCEEE 169
              E E
Sbjct: 561 LLAEIE 566


>At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical to
           kinesin-like protein [Arabidopsis thaliana] GI:27260890;
           contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 104 DKECPAYKIKMKRHDAITKMTELVQEYDPSATRVHILRKIGSLRACVRREYKRVQESRRK 163
           DKE   Y++  +  +  ++M +L   YDP+A + H  +KI    A V  E + VQE R +
Sbjct: 508 DKEL--YELNRRLEEKESEM-KLFDGYDPAALKQHFGKKI----AEVEDEKRSVQEERNR 560

Query: 164 ATCEEE 169
              E E
Sbjct: 561 LLAEIE 566


>At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67,
           putative nearly identical to 67kD chloroplastic
           RNA-binding protein, P67 [Arabidopsis thaliana]
           GI:9755842
          Length = 688

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 3   NLLYSKSIHDQARTTQDRSDVRQRYSLSICTTYAVRGGAEGCAGVEPPIRSTRLNPTAST 62
           N+  + S++D+ART + R D    +S ++   Y V G  +GC  +   +++  + P    
Sbjct: 246 NVDMALSLYDRARTEKWRIDA-VTFS-TLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVI 303

Query: 63  FSDLRDA 69
           ++ L D+
Sbjct: 304 YNRLIDS 310


>At5g38410.1 68418.m04643 ribulose bisphosphate carboxylase small
          chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)
          identical to SP|P10798 Ribulose bisphosphate
          carboxylase small chain 3B, chloroplast precursor (EC
          4.1.1.39) (RuBisCO small subunit 3B) {Arabidopsis
          thaliana}
          Length = 181

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 33 TTYAVRGGAEGCAGVEPPIRSTRLNPTASTFSDLRDAPLDERID 76
          T+ A  GG   C  V PPI   +   T S   DL D  L + +D
Sbjct: 44 TSIASNGGRVSCMKVWPPIGKKKFE-TLSYLPDLSDVELAKEVD 86


>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
           chloroplast (DRT111) nearly identical to SP|P42698
           DNA-damage-repair/toleration protein DRT111, chloroplast
           precursor {Arabidopsis thaliana}; contains Pfam profiles
           PF01585: G-patch domain, PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 387

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 267 PAYKIKMKRHDAITKMTE-LVQEYDPSATRVHILRKIESLRACVRREYKRVQESRRKANC 325
           PA +       A+  +T  +++EYDP+    +   K E  R     E KR  + RR+ + 
Sbjct: 79  PANESAPSHQPALVGVTSSVIEEYDPARPNDYEEYKREKKRKATEAEMKREMDKRRQEDE 138

Query: 326 EEE 328
           E +
Sbjct: 139 ERD 141


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,489,056
Number of Sequences: 28952
Number of extensions: 352273
Number of successful extensions: 779
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 15
length of query: 361
length of database: 12,070,560
effective HSP length: 82
effective length of query: 279
effective length of database: 9,696,496
effective search space: 2705322384
effective search space used: 2705322384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)