Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001837-TA|BGIBMGA001837-PA|undefined
(173 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g28080.1 68417.m04027 expressed protein 31 0.42
At3g66652.1 68416.m00776 fip1 motif-containing protein contains ... 29 1.7
At4g07950.1 68417.m01275 DNA-directed RNA polymerase III family ... 28 3.9
At1g01210.1 68414.m00035 DNA-directed RNA polymerase III family ... 28 3.9
At4g04580.1 68417.m00671 myb family transcription factor contain... 27 6.9
At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) / DNA-... 27 6.9
At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) famil... 27 6.9
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 27 9.1
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 27 9.1
At1g06070.1 68414.m00636 bZIP transcription factor, putative (bZ... 27 9.1
>At4g28080.1 68417.m04027 expressed protein
Length = 1660
Score = 31.1 bits (67), Expect = 0.42
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 4 EKNDTELTKKAPNKNLANDDEGRVGEMVTADLNEAATESLGGVAEPAIRNEIIPLANV 61
E +DT L K+P N +N E +G + DL +A +++ G E + P ++V
Sbjct: 1332 EDSDTCLLNKSPTANDSNGSESVIGVKLQKDLCDAELKTVDGETENLPNGDSSPKSSV 1389
>At3g66652.1 68416.m00776 fip1 motif-containing protein contains
Pfam profile PF05182: Fip1 motif
Length = 980
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 130 AVDVKRRVEKKSIQRNPRRSIGNGTKKPCPRCGHSCCFKDSS 171
A+ +KR + ++ RRS + +K+ C R G++ KD+S
Sbjct: 394 AISIKRGEDSGTMHSRHRRSHEDSSKRHCGRAGYARYVKDAS 435
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/72 (22%), Positives = 29/72 (40%)
Query: 32 TADLNEAATESLGGVAEPAIRNEIIPLANVISKTGSQIETTHANFRNEVKPQSSKQRSRG 91
T L ++AT+ V+ P + + K G T H+ R + S + R
Sbjct: 366 TESLKDSATDDQREVSTPPQEARLAEHEAISIKRGEDSGTMHSRHRRSHEDSSKRHCGRA 425
Query: 92 RFLDFVRHARPS 103
+ +V+ A P+
Sbjct: 426 GYARYVKDASPT 437
>At4g07950.1 68417.m01275 DNA-directed RNA polymerase III family
protein similar to SP|Q9Y2Y1 DNA-directed RNA
polymerases III 12.5 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase III C11 subunit) {Homo sapiens}; contains
Pfam profiles PF02150: RNA polymerases M/15 Kd subunit,
PF01096: Transcription factor S-II (TFIIS)
Length = 106
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 154 TKKPCPRCGH-SCCFKDSSMR 173
T+ PCPRCGH FK +R
Sbjct: 64 TEAPCPRCGHDKAYFKSMQIR 84
>At1g01210.1 68414.m00035 DNA-directed RNA polymerase III family
protein similar to SP|O13896 DNA-directed RNA
polymerases III 12.5 kDa polypeptide (EC 2.7.7.6)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF02150: RNA polymerases M/15 Kd subunit, PF01096:
Transcription factor S-II (TFIIS)
Length = 106
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 154 TKKPCPRCGH-SCCFKDSSMR 173
T+ PCPRCGH FK +R
Sbjct: 64 TEAPCPRCGHDKAYFKSMQIR 84
>At4g04580.1 68417.m00671 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 166
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 41 ESLGGVAEPAIRNEIIPLANVISKTGSQIETTHANFRNEVKPQSSKQ 87
E LGG E A I+ L V T S +++ +RN+ K +SSK+
Sbjct: 32 EKLGG-EESATPKRILSLMGVRDLTISHVKSHLQMYRNKKKEESSKE 77
>At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) /
DNA-repair protein, putative identical to UV
hypersensitive protein [Arabidopsis thaliana]
gi|13649704|gb|AAK37472; similar to Swiss-Prot:P14629
DNA-repair protein complementing XP-G cells homolog
(Xeroderma pigmentosum group G complementing protein
homolog) [Xenopus laevis]
Length = 1479
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 4 EKNDTELTKKAPNKNLANDDEGRVG--EMVTADLNEAATE 41
E +++ + +P++N DEGR+G + V A +N+ +E
Sbjct: 1333 ELDESRSNEGSPSENFEEVDEGRIGNDDSVDASINDCPSE 1372
>At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) family
protein contains Pfam domain, PF00096: Zinc finger, C2H2
type; contains Pfam domain, PF01428: AN1-like Zinc
finger
Length = 279
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 139 KKSIQRNPRRSIGNGTKKPCPRCGHSCCFKD 169
+K+ +RN +++ GN T CPRC F+D
Sbjct: 233 EKTHERNKKQNHGNVTVDVCPRCSRG--FRD 261
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 7 DTELTKKAPNKNLANDDEGRVG------EMVTADLNEAATESLGGVAEPAIRNEIIPLAN 60
DTE TK +L + + G E+ T D E+ TE G VAE + +I +N
Sbjct: 680 DTEETKSLAKTDLESPETSAEGSTVLTDELATGDPTESTTEQSGEVAE-TVEKYMIDESN 738
Query: 61 VISKTGSQI 69
+ G +
Sbjct: 739 LSDYVGKPV 747
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 12 KKAPNKNLANDDEGRVGEMVTADLNEAATESLGGV-AEPAIRNEIIPLANVISKTG 66
KK P++ ND +V + V N AAT LG V +E + +++ AN K+G
Sbjct: 478 KKKPSRQKGNDTSVQVEDEVEPQENHAAT--LGEVGSEDTEKVDLLESANTGEKSG 531
>At1g06070.1 68414.m00636 bZIP transcription factor, putative
(bZIP69) similar to transcriptional activator RF2a
GB:AF005492 GI:2253277 from [Oryza sativa]; contains
Pfam profile PF00170: bZIP transcription factor
Length = 423
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 29 EMVTADLNEAATESLGGVAEPAIRNEIIPLANVISKTGSQIE 70
+M + + +T +G +EP RNE+ +N+ S GS E
Sbjct: 118 DMEKFNSSATSTSQMGEPSEPTWRNELASTSNLQSTPGSSSE 159
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.129 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,659,492
Number of Sequences: 28952
Number of extensions: 120139
Number of successful extensions: 296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 11
length of query: 173
length of database: 12,070,560
effective HSP length: 76
effective length of query: 97
effective length of database: 9,870,208
effective search space: 957410176
effective search space used: 957410176
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)
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