GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001837-TA|BGIBMGA001837-PA|undefined
         (173 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    28   0.66 
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    27   2.0  
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    26   3.5  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   4.7  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   4.7  

>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 56  IPLANVISKTGSQIETTHANFRNEVK 81
           + L+NV   T  QI T+H  FR+EVK
Sbjct: 143 LSLSNVQDPTVMQINTSHHRFRSEVK 168


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 4   EKNDTELTKKAPNKNLANDDEGRVGEMVTADLNEAATESLGGVAEPAIRNE 54
           +KN  +  K+  + N A D  GR  ++   +LN   T+S    AEP    E
Sbjct: 422 DKNSKDF-KETEDMNGAEDMHGRAPQITKDNLNLTTTDSPMSEAEPVSEEE 471


>SPAC4D7.05 |sum1|tif34|translation initiation factor
          eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 24 EGRVGEMVTADLNEAATESLGGVAEPAIR 52
          EG  G + T D+N+++T  + G A+  +R
Sbjct: 49 EGHTGAIWTCDINKSSTLMVSGAADNTMR 77


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 124 GFTSKTAVDVKRRVEKKSIQRNPRRSIGNGTKKPCPRCGHSCCFKDSSMR 173
           GF  K  +   +   + +++   R  + N   KP PR G   CF +  M+
Sbjct: 177 GFLGKARILYAKGNYRSALKLYQRALVSNPQFKPDPRIGIGLCFWNLDMK 226


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 56  IPLANVISKTGSQIETTHANFRNEVKPQSSKQRSR 90
           IPL+ + + +  Q + T +N  N  KP  SKQ  R
Sbjct: 144 IPLSLLSTSSLQQRKITPSNLSNTSKPMDSKQLER 178


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,554
Number of Sequences: 5004
Number of extensions: 22777
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 5
length of query: 173
length of database: 2,362,478
effective HSP length: 68
effective length of query: 105
effective length of database: 2,022,206
effective search space: 212331630
effective search space used: 212331630
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)