GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001837-TA|BGIBMGA001837-PA|undefined
         (173 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0657 - 19749835-19751942,19753123-19753561                       31   0.67 
05_03_0292 - 11803777-11803784,11803896-11804063,11804147-118042...    29   1.5  
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964...    29   2.0  
06_03_0950 - 26266755-26266917,26267273-26267652,26267742-262679...    28   4.7  
12_02_1032 + 25542420-25542573,25543511-25543577,25543816-255439...    27   6.2  
02_03_0404 + 18648632-18648669,18649319-18649379,18649449-186494...    27   8.2  

>08_02_0657 - 19749835-19751942,19753123-19753561
          Length = 848

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 12 KKAPNKNLANDDEGRVG-EMVTADLNEAATESLG 44
          KK+PN+ +A+D EG V  +  T  L+EA  E LG
Sbjct: 27 KKSPNRLMADDAEGGVAVDNSTVTLSEATMEELG 60


>05_03_0292 -
          11803777-11803784,11803896-11804063,11804147-11804296,
          11804481-11804540,11804621-11804806,11805468-11805516
          Length = 206

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 13/93 (13%)

Query: 8  TELTKKAPN---KNLANDDEGRVGEMVTADLNEAATESLGGVAEPAIRNEIIPLANVISK 64
          T  T+ AP    KN + +D+   G +   D+N+A TE++G +  P +R      A++   
Sbjct: 11 TSSTRSAPFGDIKNASTEDQSVGGRL---DVNDAGTENVGSIVTP-VRLPFTNSADMSYS 66

Query: 65 TGS------QIETTHANFRNEVKPQSSKQRSRG 91
          T S      Q E  H +  N    +  K+R  G
Sbjct: 67 TPSEYTMPLQAEDAHGDVTNLSASELKKKRESG 99


>02_02_0704 +
           13095449-13095584,13095671-13095990,13096102-13096423,
           13096556-13096632,13096744-13097127
          Length = 412

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 41  ESLGGVAEPAIRNEIIPLANVISKTGSQIETTHANFRNEVKPQSSKQRSR 90
           E++     P +  E IPL   +S + S+ E+THA+     K + ++   R
Sbjct: 61  ETVSDQGPPPVLEEFIPLKPSLSLSSSEEESTHADAAKSGKKEEAETSER 110


>06_03_0950 -
           26266755-26266917,26267273-26267652,26267742-26267972,
           26268247-26268419,26268549-26268693
          Length = 363

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 10  LTKKAPNKNLA--NDDEGRVGEMVTADLNEAATESLGGVAEPAIRNEIIPLA 59
           L+K    K L   ND EGR  E+VT      A +++ G A   + N + P++
Sbjct: 187 LSKMMSEKELLGYNDGEGRAFEVVTLPCGLVAGDTVLGRAPETLENAVSPVS 238


>12_02_1032 +
           25542420-25542573,25543511-25543577,25543816-25543918,
           25544435-25544505,25544639-25544702,25545260-25545316,
           25545435-25545593,25545967-25546035,25546111-25546202,
           25546579-25546657,25546923-25547088,25547480-25547604,
           25547737-25548078,25548271-25548432,25548520-25548624,
           25548766-25548860,25548948-25549044,25549848-25550165,
           25550228-25550296
          Length = 797

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 128 KTAVDVKRRVEKKSIQRNPRRSIGNGTKKPCPRC 161
           K  + +K R+ K SI R+P RSI   + K    C
Sbjct: 482 KVLIHMKERLAKSSIIRSPYRSISRTSDKVACHC 515


>02_03_0404 +
           18648632-18648669,18649319-18649379,18649449-18649476,
           18649787-18649861,18649929-18649984,18650085-18650129,
           18650224-18650475,18650586-18650680,18651114-18651204,
           18651356-18651466,18651556-18651750,18651827-18652018
          Length = 412

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 33  ADLNEAATESLGGVAEPAIRNEIIPLANVISKTGSQIETTHANFRNEVKPQSSKQ 87
           A + E    S GG+  P ++  II  +   SKT +Q  +   + ++  KP S+K+
Sbjct: 96  AGIIEKFVASEGGIVTPGVKVAIISKSAAQSKTHTQ-SSEDTSQKHSTKPPSTKE 149


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,474,553
Number of Sequences: 37544
Number of extensions: 145591
Number of successful extensions: 303
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 6
length of query: 173
length of database: 14,793,348
effective HSP length: 77
effective length of query: 96
effective length of database: 11,902,460
effective search space: 1142636160
effective search space used: 1142636160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)