Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001837-TA|BGIBMGA001837-PA|undefined
(173 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18) 28 3.7
SB_33447| Best HMM Match : 7tm_1 (HMM E-Value=0.00026) 28 4.8
SB_15799| Best HMM Match : PH (HMM E-Value=0.76) 28 4.8
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 28 4.8
SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30) 27 6.4
SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18) 27 8.4
SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18) 27 8.4
>SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 29.1 bits (62), Expect = 2.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 148 RSIGNGTKKPCPRCGHSCCFKDSSM 172
+ + GT +PC R GH+ C + M
Sbjct: 191 KGVATGTIQPCERAGHAACIVEDRM 215
>SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)
Length = 878
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 135 RRVEKKSIQRNPRRSIGNGTKKPCPRCGHS 164
RR +K+ QRNP+R +K C RCG S
Sbjct: 28 RRNQKQHNQRNPKRE----DRKTCARCGSS 53
>SB_33447| Best HMM Match : 7tm_1 (HMM E-Value=0.00026)
Length = 557
Score = 27.9 bits (59), Expect = 4.8
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 126 TSKTAVDVKRRVEKKSIQRNPRRSIGNGTKKPC 158
++K +D+K ++ K I+ NP + + +G + C
Sbjct: 307 STKNVIDLKPQIAKNGIKSNPVKVLSDGVEAKC 339
>SB_15799| Best HMM Match : PH (HMM E-Value=0.76)
Length = 836
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/74 (22%), Positives = 26/74 (35%)
Query: 65 TGSQIETTHANFRNEVKPQSSKQRSRGRFLDFVRHARPSFPRXXXXXXXXXXXXXXXXXG 124
TGSQ TH + + + + +S+ RS F RH + + R
Sbjct: 430 TGSQPSQTHLSLKEKDRESTSRSRSPSPFRRLHRHTQEATERLTASCSPAISLSSLLAAA 489
Query: 125 FTSKTAVDVKRRVE 138
+ VK VE
Sbjct: 490 KDDSSTDPVKENVE 503
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/74 (22%), Positives = 26/74 (35%)
Query: 65 TGSQIETTHANFRNEVKPQSSKQRSRGRFLDFVRHARPSFPRXXXXXXXXXXXXXXXXXG 124
TGSQ TH + + + + +S+ RS F RH + + R
Sbjct: 304 TGSQPSQTHLSLKEKDRESTSRSRSPSPFRRLHRHTQEATERLTASCSPAISLSSLLAAA 363
Query: 125 FTSKTAVDVKRRVE 138
+ VK VE
Sbjct: 364 KDDSSTDPVKENVE 377
>SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 135 RRVEKKSIQRNPRRSIGNGTKKPCPRCGHS 164
RR +K+ QRNP+R +K C RCG S
Sbjct: 293 RRNQKQHNQRNPKRE----DRKTCGRCGSS 318
>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 156 KPCPRCGHSCCFKDSSM 172
KP PR GHS C DS +
Sbjct: 596 KPTPRSGHSSCLLDSKL 612
>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
Length = 3015
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/60 (25%), Positives = 22/60 (36%)
Query: 6 NDTELTKKAPNKNLANDDEGRVGEMVTADLNEAATESLGGVAEPAIRNEIIPLANVISKT 65
N TE AP N+ N E + N +L P + + P +NV + T
Sbjct: 35 NSTEAPTLAPTSNITNSTEAPTLAPTSNIANSTEAPTLAPTEGPTLGPTVAPTSNVTNST 94
>SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18)
Length = 417
Score = 27.1 bits (57), Expect = 8.4
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 4 EKNDTELTKKAPNKNLANDDEGRVGEMVTADLNEAATESLGGVAEPAIRNEIIPLANVIS 63
EKND ++ K+ N A+D E + E + T VA + ++ N
Sbjct: 102 EKNDQDVQKEENNSQYADDFENEM-ESTKTQQKQVETRPQNRVAATGVSSQGPDYKNAKF 160
Query: 64 KTGSQIETTHANFRNEVKPQSSKQRSRG 91
+ E +A R +VK S+ R G
Sbjct: 161 ADDYEKEMENAK-RKQVKDGESQDRDTG 187
>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
Length = 521
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 131 VDVKRRVEKKSIQRNPRRSIGNGTKKPCPRCGH 163
+D+K + + + I R P ++ + PCP CG+
Sbjct: 325 IDLKYKKKIEQIVRKPDKTEEEEPQDPCPYCGY 357
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.129 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,281,598
Number of Sequences: 59808
Number of extensions: 172679
Number of successful extensions: 462
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 11
length of query: 173
length of database: 16,821,457
effective HSP length: 77
effective length of query: 96
effective length of database: 12,216,241
effective search space: 1172759136
effective search space used: 1172759136
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)
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