GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001837-TA|BGIBMGA001837-PA|undefined
         (173 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    29   1.8  
AF039720-5|AAB96696.1|  408|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
            autosome protein2 protein.
          Length = 1758

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 6    NDTELTKKAPNKNLANDDEGRVGEMVTADLNEAATESLGGVAEPAIRNEIIPLAN 60
            N+ E+    P+  +  +    V E   A   EAA E +G +  P++ +EI+   N
Sbjct: 1587 NEAEILASMPDPQMVAERSAAVAEAAAA---EAAVERIGALPPPSVVHEIVHQVN 1638


>AF039720-5|AAB96696.1|  408|Caenorhabditis elegans Hypothetical
           protein F33D11.2 protein.
          Length = 408

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 47  AEPAIRNEIIPLANVISKTGSQIETTHANFRNE-VKPQSSKQRS 89
           AEP I  + IP AN+  + G++ E      ++E V PQ+  Q++
Sbjct: 108 AEPKIVKQPIPAANLKGQLGTKREKKAEKVKSELVVPQAEAQKN 151


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,826,039
Number of Sequences: 27539
Number of extensions: 126397
Number of successful extensions: 224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 2
length of query: 173
length of database: 12,573,161
effective HSP length: 77
effective length of query: 96
effective length of database: 10,452,658
effective search space: 1003455168
effective search space used: 1003455168
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)