GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001837-TA|BGIBMGA001837-PA|undefined
         (173 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   3.8  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.0  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   6.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   6.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 16  NKNLANDDEGRVGEMVTADLNEAATESLGGVAEPAIRNEIIPLANVISKTGSQIETTHAN 75
           N   ++ +E RV +    + N+  +++    +E  ++ +I+ L   IS + S I ++  N
Sbjct: 326 NNPFSDVEERRVSK-TAMNSNQIVSDNSLSSSEEKLKQDILNLRTDISSSSSSISSSEEN 384

Query: 76  FRNEVKP 82
              + KP
Sbjct: 385 DFWQPKP 391


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 47  AEPAIRNEIIPLANVISKTGSQIETTHANFRN 78
           A+P   + +I    ++S TG  +  +H  FR+
Sbjct: 98  ADPQYSSAVINTNVIVSHTGEVVWLSHGIFRS 129


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)

Query: 149 SIGNGTKKPCPRCGHSC 165
           SI  GT   C  CG SC
Sbjct: 27  SIRQGTTSYCLGCGDSC 43


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 9   ELTKKAPNKNLANDDEGRVGEMVTAD 34
           E+T +   K L+N +  +VG+ VT +
Sbjct: 424 EITWELDGKRLSNTERLQVGQYVTVN 449


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 70  ETTHANFRNEVKPQSSKQRSRGRFLDFVRHARPSFPR 106
           E    +++NE K +  ++RS+ R  D     R   P+
Sbjct: 44  EREQKSYKNERKYRKYRERSKERSRDRTERERSREPK 80


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 70  ETTHANFRNEVKPQSSKQRSRGRFLDFVRHARPSFPR 106
           E    +++NE K +  ++RS+ R  D     R   P+
Sbjct: 44  EREQKSYKNERKYRKYRERSKERSRDRTERERSREPK 80


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,517
Number of Sequences: 429
Number of extensions: 1727
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 173
length of database: 140,377
effective HSP length: 54
effective length of query: 119
effective length of database: 117,211
effective search space: 13948109
effective search space used: 13948109
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)