Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001836-TA|BGIBMGA001836-PA|IPR002048|Calcium-binding
EF-hand, IPR013032|EGF-like region, IPR001881|EGF-like
calcium-binding, IPR006210|EGF, IPR009030|Growth factor, receptor,
IPR013091|EGF calcium-binding, IPR003367|Thrombospondin type 3 repeat,
IPR008859|Thrombospondin, C-terminal
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    33   0.21 
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    28   5.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   5.9  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   7.8  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 20/132 (15%)

Query: 63  CQDLPDGRYQCG-KCPSGFHGNGVECYRISCRANTCFQGVSCEETQYGPKCGSCPTGYVG 121
           C  L    ++C  KC  G  G   E   I CR       V+CE+ Q     G  PT    
Sbjct: 479 CGKLLSCGHRCKYKCHLGSCGTCSETLTIPCRCTANEVQVTCEQLQN----GFIPT---- 530

Query: 122 DGRQCQHVCDAQKPCGRERRCMPKSTSPYYECE----GCPSGYQWNGYTCVDMDECDLI- 176
               C+ +C     CGR  +C  K  S Y + +      P G +   +   +  E + I 
Sbjct: 531 ----CERLCTILLSCGR-HQCNKKCCSGYSKAQTRLARRPKGAKLRYHLLTEEFEEEHIC 585

Query: 177 -RPCDDLVSCRN 187
            RPC+  +SC N
Sbjct: 586 FRPCNKKLSCGN 597


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 7/55 (12%)

Query: 669 VMWKKDKQTYWQKTPFRAV---AENGIQLKLVNSK---TGPGKILRNALWNTNST 717
           V+WK+  +T ++  P+R +   A NG+ ++LV SK   T   K + N    +N+T
Sbjct: 350 VVWKESTRTVFETVPWRILSSQATNGL-IELVRSKTRLTSKNKTVSNVYDESNAT 403


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 743  LLHRPKIGLIRLKMYENNRLVADSGNTYDFTLKGGRLGVFCFSQEMII 790
            ++ RP  GL  +K+  NN L  D+GN    TL+  ++G    ++E+++
Sbjct: 962  IMLRPYNGL-EVKLNANNNLEIDTGNIPSLTLR-RQIGFLTMTEELLL 1007


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 94  ANTCFQGVSCEETQYGPKCGSCPTGYVGDGRQCQHVCDAQKPCGRERRCMPKSTSPY-YE 152
           +N  FQ  S + +       + P  Y G+  +  H C      GR      K   P  ++
Sbjct: 225 SNNLFQSDSLKPSMVSSHTSTKPVLYRGNSEKSCHSCGGSLRAGRIISASGKKLHPQCFK 284

Query: 153 CEGCPSGYQWNGY 165
           C+ C    +  G+
Sbjct: 285 CDTCSQNLEHVGF 297


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.139    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,801,611
Number of Sequences: 5004
Number of extensions: 162063
Number of successful extensions: 266
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 7
length of query: 804
length of database: 2,362,478
effective HSP length: 79
effective length of query: 725
effective length of database: 1,967,162
effective search space: 1426192450
effective search space used: 1426192450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)