GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001836-TA|BGIBMGA001836-PA|IPR002048|Calcium-binding
EF-hand, IPR013032|EGF-like region, IPR001881|EGF-like
calcium-binding, IPR006210|EGF, IPR009030|Growth factor, receptor,
IPR013091|EGF calcium-binding, IPR003367|Thrombospondin type 3 repeat,
IPR008859|Thrombospondin, C-terminal
         (804 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   1.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   1.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   3.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   5.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   5.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   9.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 13/48 (27%), Positives = 17/48 (35%)

Query: 36  CPGSQTSDGQTCRTACSANPCFGGRVPCQDLPDGRYQCGKCPSGFHGN 83
           CP    +DG+T +T C    C           +  Y     P G  GN
Sbjct: 443 CPHFNVTDGETTKTFCCKGYCMDLLKELSKTINFTYSLALSPDGQFGN 490


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 10/53 (18%)

Query: 73  CGKCPSGFHGNGVEC------YRISCRANTCFQ---GVSCEETQY-GPKCGSC 115
           CG   SG+H N + C      +R S   N  +Q   G +CE   Y   KC  C
Sbjct: 190 CGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQEC 242


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)

Query: 536 QIVPNRDQKDSDNDGIGD 553
           QI P R  +DSD DGIGD
Sbjct: 34  QIYP-RSFQDSDGDGIGD 50


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)

Query: 536 QIVPNRDQKDSDNDGIGD 553
           Q+ P R  KDS+ DGIGD
Sbjct: 34  QVYP-RSFKDSNGDGIGD 50


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)

Query: 536 QIVPNRDQKDSDNDGIGD 553
           Q+ P R  KDS+ DGIGD
Sbjct: 34  QVYP-RSFKDSNGDGIGD 50


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 674 DKQTYWQKTPFRAVAENGI-QLKLVNSKTGPGK 705
           D   YW++TP R V E  + Q  ++  +T   K
Sbjct: 188 DVVMYWKETPVRGVEEAELPQFTIIGYETNDRK 220


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.139    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,498
Number of Sequences: 429
Number of extensions: 11596
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 6
length of query: 804
length of database: 140,377
effective HSP length: 63
effective length of query: 741
effective length of database: 113,350
effective search space: 83992350
effective search space used: 83992350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)