Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001835-TA|BGIBMGA001835-PA|IPR001159|Double-stranded RNA
binding, IPR000999|Ribonuclease III
         (152 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    31   0.076
SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.71 
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    27   1.2  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   5.0  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    25   6.6  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    24   8.7  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 31.1 bits (67), Expect = 0.076
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 19   DVEVPKALGDLFESVAGAIFLDSGMSL 45
            +++ PK + D  E++  AIFLDSG SL
Sbjct: 1210 EIDSPKFISDTLEAMICAIFLDSGFSL 1236


>SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 33  VAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPVRELLEA-EPDTAKFGKPERL 91
           +AG++F DSG+S+ +   +    + R ++  S+     PV  +    +PDT  F   E  
Sbjct: 16  LAGSVFADSGVSIVSTPATTTVYLVRTVDCSSSEVTSQPVVTVYNVLKPDTVTFTVTETA 75

Query: 92  ADGRRVRVCVEXXXXX-XXXXXXXNYRIAKGTAARCALRHLRRGRCSARPPPHTHSP 147
               +  + ++                 A   +   A  H+  G     PP  TH+P
Sbjct: 76  GSYAKRSIEIDSDSVSPTSATTTTPVASATDVSVYSASIHVPTG----NPPVDTHNP 128


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 4   RQHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAF 63
           R+HYL+  DE     D+++   +    +S     F D      + W   G+   + + A 
Sbjct: 248 RRHYLLKNDERNPKSDIKISNGIKSGLDS-----FDDQSSVEASGWTEVGK-NKKPVIAR 301

Query: 64  SAAAPKSPVREL 75
           SA   +SP+ ++
Sbjct: 302 SATVERSPISQI 313


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 4   RQHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRL 55
           R+ +L     ME   DV+  K  G++      A F+D  +  G +   YG L
Sbjct: 153 RKTFLSFSKMMEHVRDVQHKKETGEIKSLSPNATFIDEFIESGVI-TGYGVL 203


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 9   IHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSA 65
           IH+D+++Q    ++   + DL E+VA     D G++   + K    +    L+ F +
Sbjct: 595 IHKDKLDQQAVEDLRSKITDLRETVAKVNAGDEGITSEDMKKKIDEIQQLSLKVFES 651


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 2   LGRQHYLIHEDEMEQAEDVEVPKALGDLFESV 33
           LG  +YL+   E   ++ V++P++  D  ESV
Sbjct: 519 LGALNYLLEVTEYLTSKTVDLPRSTADEVESV 550


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,876
Number of Sequences: 5004
Number of extensions: 20104
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 6
length of query: 152
length of database: 2,362,478
effective HSP length: 67
effective length of query: 85
effective length of database: 2,027,210
effective search space: 172312850
effective search space used: 172312850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)