GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001835-TA|BGIBMGA001835-PA|IPR001159|Double-stranded RNA
binding, IPR000999|Ribonuclease III
         (152 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   2.7  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    20   8.1  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        20   8.1  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    20   8.1  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    20   8.1  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 137 SARPPPHTHSPYHDVQ 152
           S  PPPH ++P   +Q
Sbjct: 277 SLSPPPHVYNPPDHIQ 292


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 3   GRQHYLIHEDEMEQAED 19
           G QH+ +HE++ +   D
Sbjct: 125 GHQHHFLHENKYQLEVD 141


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 48  VWKSYGRLMGRELEAFSAAAPKSPVRELLEAEPDTAKFGKPERLADG 94
           VW+ +G     ++   +A   K+P    L+       F +  R +DG
Sbjct: 285 VWEGFGDFQPSQVHKQTAICFKAPRYHTLDITEPVKVFIQLRRPSDG 331


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 3   GRQHYLIHEDEMEQAED 19
           G QH+ +HE++ +   D
Sbjct: 125 GHQHHFLHENKYQLEVD 141


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 3   GRQHYLIHEDEMEQAED 19
           G QH+ +HE++ +   D
Sbjct: 125 GHQHHFLHENKYQLEVD 141


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,068
Number of Sequences: 317
Number of extensions: 1061
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 152
length of database: 114,650
effective HSP length: 52
effective length of query: 100
effective length of database: 98,166
effective search space:  9816600
effective search space used:  9816600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)