Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001835-TA|BGIBMGA001835-PA|IPR001159|Double-stranded RNA
binding, IPR000999|Ribonuclease III
(152 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 54 7e-08
10_08_0429 + 17845303-17845431,17845508-17845684,17845782-178458... 53 1e-07
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 48 3e-06
09_02_0404 - 8592872-8593231,8593735-8594004,8595551-8595964,859... 47 8e-06
03_05_0154 - 21302056-21302418,21302920-21303198,21304745-213051... 45 3e-05
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 44 5e-05
06_02_0336 + 14613185-14613610,14615746-14615892,14615976-14616302 36 0.019
05_03_0243 + 10845284-10845676,10846722-10846889,10846946-108470... 34 0.057
01_05_0306 - 20662851-20663093,20663180-20663320,20666640-20667026 33 0.13
06_01_0764 - 5716208-5717727,5718452-5718505,5718506-5718683 30 0.93
12_02_0784 - 23130783-23131273,23131701-23131778,23131913-231319... 27 6.5
03_01_0003 - 5743-6354 27 6.5
04_04_0716 + 27513201-27513854 27 8.6
03_04_0006 + 16257288-16259522 27 8.6
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743... 27 8.6
01_05_0526 + 22944889-22944999,22945207-22945317,22945397-229455... 27 8.6
>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 53.6 bits (123), Expect = 7e-08
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 19 DVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPVRELLE 77
D + PK LGD+ ES+AGAIFLDSG VWK + L+ + P PVREL E
Sbjct: 1663 DCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVT--PETLPMHPVRELQE 1719
>10_08_0429 + 17845303-17845431,17845508-17845684,17845782-17845895,
17846386-17846520,17847659-17847790,17847919-17848071,
17848574-17848709,17849338-17849443,17849538-17849730,
17849803-17849963,17850227-17850442,17850732-17850997,
17851505-17851779,17851871-17852327,17853973-17854055,
17854260-17854469,17854897-17855373,17855462-17855743,
17855910-17856236,17856418-17856507,17856788-17856899,
17857004-17857104,17857524-17857568
Length = 1458
Score = 52.8 bits (121), Expect = 1e-07
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 11 EDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKS 70
E E Q +VPK LGD+ ES+AGA+F+D+ ++ VW+ + L+ + A P
Sbjct: 1221 ESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLALP-- 1278
Query: 71 PVRELLE 77
P RELLE
Sbjct: 1279 PYRELLE 1285
>04_04_0468 - 25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 48.0 bits (109), Expect = 3e-06
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 9 IHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELE-AFSAAA 67
+ E + E+ PKALGD+ ES GA+ LDSG +L VWK L+ L A
Sbjct: 1225 LSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTN 1284
Query: 68 PKSPVRELLEAEPDTAKFGKPERLADG 94
P +REL + KP + ADG
Sbjct: 1285 PMRELRELCQCHGFELGLPKPMK-ADG 1310
>09_02_0404 -
8592872-8593231,8593735-8594004,8595551-8595964,
8596249-8596398
Length = 397
Score = 46.8 bits (106), Expect = 8e-06
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 20 VEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPVRELLE-A 78
+ +PK LGD+ ES+AGAI+LDS VW+S RL+ E A PV+ L E
Sbjct: 274 IGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLL--EPLATPETIEPDPVKGLQEFC 331
Query: 79 EPDTAKFGKPERLADG-RRVRVCVEXXXXXXXXXXXXNYRIAKGTAARCALRHLRRG 134
+ + K + DG V V+ ++AK A++ L+ L G
Sbjct: 332 DRRSFKITYEKNHVDGVSSVIARVKAGETTYSATKSGPCKLAKKLASKAVLKDLIAG 388
>03_05_0154 -
21302056-21302418,21302920-21303198,21304745-21305158,
21305443-21305592
Length = 401
Score = 44.8 bits (101), Expect = 3e-05
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 20 VEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPVRELLE 77
+ +PK LGD+ ES+AGAI+LDS VW+S RL+ E A PV+ L E
Sbjct: 277 IGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLL--EPLATPETIEPDPVKGLQE 332
>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 44.0 bits (99), Expect = 5e-05
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 23 PKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPVRELLE 77
PK LGD+ ES+AGAI LD+ + L VW + L+ + + P P REL+E
Sbjct: 1304 PKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELP--PYRELIE 1356
>06_02_0336 + 14613185-14613610,14615746-14615892,14615976-14616302
Length = 299
Score = 35.5 bits (78), Expect = 0.019
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 20 VEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPVRELLE 77
++ PK L D+ ES+ GAI+ DS + VW+ + +L + + K PV EL E
Sbjct: 161 LDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLG--KHPVSELFE 216
>05_03_0243 +
10845284-10845676,10846722-10846889,10846946-10847044,
10847252-10847626
Length = 344
Score = 33.9 bits (74), Expect = 0.057
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 20 VEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMG 57
V+ PK L D+ E++A A+++D L +WK L G
Sbjct: 157 VKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHG 194
>01_05_0306 - 20662851-20663093,20663180-20663320,20666640-20667026
Length = 256
Score = 32.7 bits (71), Expect = 0.13
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 18 EDVEVPKALGDLFESVAGAIFLDSGMSLGAVWK 50
+ +E P+ L D+ E++ GA++LDS + L + K
Sbjct: 144 DPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQK 176
>06_01_0764 - 5716208-5717727,5718452-5718505,5718506-5718683
Length = 583
Score = 29.9 bits (64), Expect = 0.93
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 10 HEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKS--YGRLMGRELEAFSAAA 67
HE++ E + KAL +++ + L SGMS S G L AF+
Sbjct: 471 HEEKQEMGKRAHNQKALAEIYLLSFADVLLTSGMSTFGYMSSALAGLRPAMLLTAFNHKV 530
Query: 68 PKSPVRELLEAEP 80
P++P + EP
Sbjct: 531 PRTPCVRAVSMEP 543
>12_02_0784 -
23130783-23131273,23131701-23131778,23131913-23131969,
23132062-23132116,23132738-23133010
Length = 317
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 7 YLIHEDEMEQAEDV 20
YLIHED +E+ EDV
Sbjct: 136 YLIHEDRVEEVEDV 149
>03_01_0003 - 5743-6354
Length = 203
Score = 27.1 bits (57), Expect = 6.5
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 29 LFESVAGAIFLDS--GMSLGAVWKSYGRLMGRELEA-FSAAAPKSPVRELLEA 78
L V G LD GM L VWK G EL A +AA +P + EA
Sbjct: 108 LLHKVVGWRLLDDADGMRLQCVWKVRDEACGHELVARINAAVDGAPATVVFEA 160
>04_04_0716 + 27513201-27513854
Length = 217
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 64 SAAAPKSPVRELLEAEPDTAKFGKPERLADGR 95
SAA+P+ P + EA+PD+ F P+ L D R
Sbjct: 152 SAASPQPPPPDA-EADPDSTLFDLPDLLLDLR 182
>03_04_0006 + 16257288-16259522
Length = 744
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 58 RELEAFSAAAPKSPVRELLEAEPDTAKFGKPERLADGRRV 97
R +E F A+P+ PV+ + P T F P L G R+
Sbjct: 320 RHIEIFDVASPEQPVKITQKTRPKTDHF-NPFVLDGGSRI 358
>03_02_0320 +
7437528-7437623,7437725-7437772,7438885-7438994,
7439651-7439735,7439839-7440115,7440296-7440454,
7440563-7440666,7440930-7441168,7441265-7441583,
7441665-7442069,7442157-7442294,7442376-7442555
Length = 719
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 19 DVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAF 63
D+ P +LG L + A + + LG S+ R+M L+AF
Sbjct: 657 DLYWPDSLGPLDLDIPSATYHADDLLLGDSQNSWNRMMANSLDAF 701
>01_05_0526 +
22944889-22944999,22945207-22945317,22945397-22945592,
22946454-22946512,22946761-22946958,22947233-22947341,
22947431-22947696
Length = 349
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 12 DEMEQAEDVEV-PKALGDLFESVAGAIFLDSGMSLGAVWKSYGR 54
+E+E+ E +EV PKA+ ++ E +A I D G GA+ YG+
Sbjct: 177 EELEKVEHIEVCPKAM-EITEQIADRISSDGG---GALIIDYGK 216
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,734,214
Number of Sequences: 37544
Number of extensions: 167946
Number of successful extensions: 506
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 16
length of query: 152
length of database: 14,793,348
effective HSP length: 76
effective length of query: 76
effective length of database: 11,940,004
effective search space: 907440304
effective search space used: 907440304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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