GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001835-TA|BGIBMGA001835-PA|IPR001159|Double-stranded RNA
binding, IPR000999|Ribonuclease III
         (152 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.        167   2e-43
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    23   3.2  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   5.6  
DQ974169-1|ABJ52809.1|  508|Anopheles gambiae serpin 11 protein.       22   9.8  
DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein O-fucosylt...    22   9.8  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score =  167 bits (405), Expect = 2e-43
 Identities = 79/118 (66%), Positives = 93/118 (78%)

Query: 16   QAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPVREL 75
            +AEDVEVPKALGD+FES+AGAIFLDS MSL  VWK Y ++MG E+E FS++ PKSP+REL
Sbjct: 2132 EAEDVEVPKALGDVFESIAGAIFLDSDMSLDTVWKVYRKMMGPEIEKFSSSVPKSPIREL 2191

Query: 76   LEAEPDTAKFGKPERLADGRRVRVCVEXXXXXXXXXXXXNYRIAKGTAARCALRHLRR 133
            LE EP+TAKFGKPE+L DGRRVRV VE            NYRIAK TAA+CALR L++
Sbjct: 2192 LEMEPETAKFGKPEKLTDGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAAKCALRQLKK 2249


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
            protein protein.
          Length = 1881

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 51   SYGR-LMGRELEAFSAAAPKSPVRELLEAEPDTAK 84
            SY R L   ++ AF +  P    +E+L A P+T K
Sbjct: 1758 SYRRQLRAAKIAAFGSTGPSRMYQEVLGAVPNTNK 1792


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 3   GRQHYLIHEDEMEQAEDVEVPKALGDLFESV 33
           G Q  L H DEM +   VEV   L + + SV
Sbjct: 173 GFQVDLRHIDEMNETNVVEVGVDLSEFYTSV 203


>DQ974169-1|ABJ52809.1|  508|Anopheles gambiae serpin 11 protein.
          Length = 508

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 56  MGRELEAFSAAAPKSPVRELLEAEPDTAKFGKPERLAD 93
           + REL  F+A    + + E+ + EP   K   PE  A+
Sbjct: 363 LDRELRRFTAQDLLTILTEIEQDEPSKVKLQLPEFKAE 400


>DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein
           O-fucosyltransferase 1 protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 54  RLMGRELEAFSAAAPKSPVRELLEAEPDTAKFGK 87
           R + R+++    AAP +P+R +  A       G+
Sbjct: 284 RQLKRQIKLHREAAPDNPIRAVFVASDSNHMLGE 317


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,055
Number of Sequences: 2123
Number of extensions: 4846
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 152
length of database: 516,269
effective HSP length: 59
effective length of query: 93
effective length of database: 391,012
effective search space: 36364116
effective search space used: 36364116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)