Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001835-TA|BGIBMGA001835-PA|IPR001159|Double-stranded RNA
binding, IPR000999|Ribonuclease III
(152 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY050230-1|AAK84929.1| 865|Drosophila melanogaster SD01621p pro... 173 1e-43
AE014297-3226|AAF56056.1| 2249|Drosophila melanogaster CG4792-PA... 173 1e-43
AB073024-1|BAB69959.1| 1722|Drosophila melanogaster double-stran... 53 2e-07
DQ228799-1|ABB54752.1| 1715|Drosophila melanogaster Dicer-2 prot... 51 6e-07
DQ228798-1|ABB54751.1| 1715|Drosophila melanogaster Dicer-2 prot... 51 6e-07
DQ228797-1|ABB54750.1| 1715|Drosophila melanogaster Dicer-2 prot... 51 6e-07
DQ228796-1|ABB54749.1| 1715|Drosophila melanogaster Dicer-2 prot... 51 6e-07
DQ228795-1|ABB54748.1| 1715|Drosophila melanogaster Dicer-2 prot... 51 6e-07
DQ228794-1|ABB54747.1| 1715|Drosophila melanogaster Dicer-2 prot... 51 6e-07
DQ228793-1|ABB54746.1| 1715|Drosophila melanogaster Dicer-2 prot... 51 6e-07
DQ228792-1|ABB54745.1| 1715|Drosophila melanogaster Dicer-2 prot... 51 6e-07
AE013599-2513|AAF57830.2| 1722|Drosophila melanogaster CG6493-PA... 51 6e-07
BT011073-1|AAR82738.1| 1640|Drosophila melanogaster SD11113p pro... 39 0.003
BT023503-1|AAY84903.1| 1327|Drosophila melanogaster LD20030p pro... 29 2.7
AY051775-1|AAK93199.1| 1071|Drosophila melanogaster LD29995p pro... 29 2.7
AF116572-1|AAD31170.1| 1327|Drosophila melanogaster ribonuclease... 29 2.7
AE013599-540|AAF59169.1| 1327|Drosophila melanogaster CG8730-PA ... 29 2.7
>AY050230-1|AAK84929.1| 865|Drosophila melanogaster SD01621p
protein.
Length = 865
Score = 173 bits (420), Expect = 1e-43
Identities = 81/132 (61%), Positives = 99/132 (75%)
Query: 2 LGRQHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELE 61
+ ++YL+ E+E + AEDVEVPKALGD+FES+AGAIFLDS MSL VW Y +M E+E
Sbjct: 726 ISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIE 785
Query: 62 AFSAAAPKSPVRELLEAEPDTAKFGKPERLADGRRVRVCVEXXXXXXXXXXXXNYRIAKG 121
FS + PKSP+RELLE EP+TAKFGKPE+LADGRRVRV V+ NYRIAK
Sbjct: 786 QFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKC 845
Query: 122 TAARCALRHLRR 133
TAA+CALR L++
Sbjct: 846 TAAKCALRQLKK 857
>AE014297-3226|AAF56056.1| 2249|Drosophila melanogaster CG4792-PA
protein.
Length = 2249
Score = 173 bits (420), Expect = 1e-43
Identities = 81/132 (61%), Positives = 99/132 (75%)
Query: 2 LGRQHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELE 61
+ ++YL+ E+E + AEDVEVPKALGD+FES+AGAIFLDS MSL VW Y +M E+E
Sbjct: 2110 ISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIE 2169
Query: 62 AFSAAAPKSPVRELLEAEPDTAKFGKPERLADGRRVRVCVEXXXXXXXXXXXXNYRIAKG 121
FS + PKSP+RELLE EP+TAKFGKPE+LADGRRVRV V+ NYRIAK
Sbjct: 2170 QFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKC 2229
Query: 122 TAARCALRHLRR 133
TAA+CALR L++
Sbjct: 2230 TAAKCALRQLKK 2241
>AB073024-1|BAB69959.1| 1722|Drosophila melanogaster
double-strand-specific ribonucleaseprotein.
Length = 1722
Score = 52.8 bits (121), Expect = 2e-07
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 13 EMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPV 72
E + +V+VPKALGD+ E++ A++LD L W+ L EL+ F+ P + +
Sbjct: 1599 EFSMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEVIFNLFEPELQEFTRKVPINHI 1657
Query: 73 RELLEAEPDTAKFGKPERLADGRRVRVCVEXX---XXXXXXXXXXNYRIAKGTAARCALR 129
R+L+E + FG P + +G V V + N AK +AA+ AL+
Sbjct: 1658 RQLVEHKHAKPVFGSP--IVEGGTVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQ 1715
Query: 130 HLRRGRCSA 138
L +C A
Sbjct: 1716 QL--SKCDA 1722
>DQ228799-1|ABB54752.1| 1715|Drosophila melanogaster Dicer-2 protein.
Length = 1715
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 13 EMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPV 72
E + +V+VPKALGD+ E++ A++LD L W+ L EL+ F+ P + +
Sbjct: 1592 EFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEVIFNLFEPELQEFTRKVPINHI 1650
Query: 73 RELLEAEPDTAKFGKPERLADGRRVRVCVEXX---XXXXXXXXXXNYRIAKGTAARCALR 129
R+L+E + F P + +G V V + N AK +AA+ AL+
Sbjct: 1651 RQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQ 1708
Query: 130 HLRRGRCSA 138
L +C A
Sbjct: 1709 QL--SKCDA 1715
>DQ228798-1|ABB54751.1| 1715|Drosophila melanogaster Dicer-2 protein.
Length = 1715
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 13 EMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPV 72
E + +V+VPKALGD+ E++ A++LD L W+ L EL+ F+ P + +
Sbjct: 1592 EFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEVIFNLFEPELQEFTRKVPINHI 1650
Query: 73 RELLEAEPDTAKFGKPERLADGRRVRVCVEXX---XXXXXXXXXXNYRIAKGTAARCALR 129
R+L+E + F P + +G V V + N AK +AA+ AL+
Sbjct: 1651 RQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQ 1708
Query: 130 HLRRGRCSA 138
L +C A
Sbjct: 1709 QL--SKCDA 1715
>DQ228797-1|ABB54750.1| 1715|Drosophila melanogaster Dicer-2 protein.
Length = 1715
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 13 EMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPV 72
E + +V+VPKALGD+ E++ A++LD L W+ L EL+ F+ P + +
Sbjct: 1592 EFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEVIFNLFEPELQEFTRKVPINHI 1650
Query: 73 RELLEAEPDTAKFGKPERLADGRRVRVCVEXX---XXXXXXXXXXNYRIAKGTAARCALR 129
R+L+E + F P + +G V V + N AK +AA+ AL+
Sbjct: 1651 RQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQ 1708
Query: 130 HLRRGRCSA 138
L +C A
Sbjct: 1709 QL--SKCDA 1715
>DQ228796-1|ABB54749.1| 1715|Drosophila melanogaster Dicer-2 protein.
Length = 1715
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 13 EMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPV 72
E + +V+VPKALGD+ E++ A++LD L W+ L EL+ F+ P + +
Sbjct: 1592 EFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEVIFNLFEPELQEFTRKVPINHI 1650
Query: 73 RELLEAEPDTAKFGKPERLADGRRVRVCVEXX---XXXXXXXXXXNYRIAKGTAARCALR 129
R+L+E + F P + +G V V + N AK +AA+ AL+
Sbjct: 1651 RQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQ 1708
Query: 130 HLRRGRCSA 138
L +C A
Sbjct: 1709 QL--SKCDA 1715
>DQ228795-1|ABB54748.1| 1715|Drosophila melanogaster Dicer-2 protein.
Length = 1715
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 13 EMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPV 72
E + +V+VPKALGD+ E++ A++LD L W+ L EL+ F+ P + +
Sbjct: 1592 EFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEVIFNLFEPELQEFTRKVPINHI 1650
Query: 73 RELLEAEPDTAKFGKPERLADGRRVRVCVEXX---XXXXXXXXXXNYRIAKGTAARCALR 129
R+L+E + F P + +G V V + N AK +AA+ AL+
Sbjct: 1651 RQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQ 1708
Query: 130 HLRRGRCSA 138
L +C A
Sbjct: 1709 QL--SKCDA 1715
>DQ228794-1|ABB54747.1| 1715|Drosophila melanogaster Dicer-2 protein.
Length = 1715
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 13 EMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPV 72
E + +V+VPKALGD+ E++ A++LD L W+ L EL+ F+ P + +
Sbjct: 1592 EFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEVIFNLFEPELQEFTRKVPINHI 1650
Query: 73 RELLEAEPDTAKFGKPERLADGRRVRVCVEXX---XXXXXXXXXXNYRIAKGTAARCALR 129
R+L+E + F P + +G V V + N AK +AA+ AL+
Sbjct: 1651 RQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQ 1708
Query: 130 HLRRGRCSA 138
L +C A
Sbjct: 1709 QL--SKCDA 1715
>DQ228793-1|ABB54746.1| 1715|Drosophila melanogaster Dicer-2 protein.
Length = 1715
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 13 EMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPV 72
E + +V+VPKALGD+ E++ A++LD L W+ L EL+ F+ P + +
Sbjct: 1592 EFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEVIFNLFEPELQEFTRKVPINHI 1650
Query: 73 RELLEAEPDTAKFGKPERLADGRRVRVCVEXX---XXXXXXXXXXNYRIAKGTAARCALR 129
R+L+E + F P + +G V V + N AK +AA+ AL+
Sbjct: 1651 RQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQ 1708
Query: 130 HLRRGRCSA 138
L +C A
Sbjct: 1709 QL--SKCDA 1715
>DQ228792-1|ABB54745.1| 1715|Drosophila melanogaster Dicer-2 protein.
Length = 1715
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 13 EMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPV 72
E + +V+VPKALGD+ E++ A++LD L W+ L EL+ F+ P + +
Sbjct: 1592 EFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEVIFNLFEPELQEFTRKVPINHI 1650
Query: 73 RELLEAEPDTAKFGKPERLADGRRVRVCVEXX---XXXXXXXXXXNYRIAKGTAARCALR 129
R+L+E + F P + +G V V + N AK +AA+ AL+
Sbjct: 1651 RQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQ 1708
Query: 130 HLRRGRCSA 138
L +C A
Sbjct: 1709 QL--SKCDA 1715
>AE013599-2513|AAF57830.2| 1722|Drosophila melanogaster CG6493-PA
protein.
Length = 1722
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 13 EMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPV 72
E + +V+VPKALGD+ E++ A++LD L W+ L EL+ F+ P + +
Sbjct: 1599 EFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEVIFNLFEPELQEFTRKVPINHI 1657
Query: 73 RELLEAEPDTAKFGKPERLADGRRVRVCVEXX---XXXXXXXXXXNYRIAKGTAARCALR 129
R+L+E + F P + +G V V + N AK +AA+ AL+
Sbjct: 1658 RQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQ 1715
Query: 130 HLRRGRCSA 138
L +C A
Sbjct: 1716 QL--SKCDA 1722
>BT011073-1|AAR82738.1| 1640|Drosophila melanogaster SD11113p protein.
Length = 1640
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 13 EMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFS 64
E + +V+VPKALGD+ E++ A++LD L W+ L EL+ F+
Sbjct: 1578 EFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEVIFNLFEPELQEFT 1628
>BT023503-1|AAY84903.1| 1327|Drosophila melanogaster LD20030p
protein.
Length = 1327
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 5 QHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFS 64
+ ++++ + ++E+ A+ + FE++ GA+ LD G+ + + + + R+ E
Sbjct: 886 EEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVAD--EVFTDALFRQDEKLL 943
Query: 65 AAAPKSPVRELLEAEP 80
+ P L E EP
Sbjct: 944 SIWKNLPEHPLQEQEP 959
>AY051775-1|AAK93199.1| 1071|Drosophila melanogaster LD29995p
protein.
Length = 1071
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 5 QHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFS 64
+ ++++ + ++E+ A+ + FE++ GA+ LD G+ + + + + R+ E
Sbjct: 630 EEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVAD--EVFTDALFRQDEKLL 687
Query: 65 AAAPKSPVRELLEAEP 80
+ P L E EP
Sbjct: 688 SIWKNLPEHPLQEQEP 703
>AF116572-1|AAD31170.1| 1327|Drosophila melanogaster ribonuclease
protein.
Length = 1327
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 5 QHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFS 64
+ ++++ + ++E+ A+ + FE++ GA+ LD G+ + + + + R+ E
Sbjct: 886 EEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVAD--EVFTDALFRQDEKLL 943
Query: 65 AAAPKSPVRELLEAEP 80
+ P L E EP
Sbjct: 944 SIWKNLPEHPLQEQEP 959
>AE013599-540|AAF59169.1| 1327|Drosophila melanogaster CG8730-PA
protein.
Length = 1327
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 5 QHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFS 64
+ ++++ + ++E+ A+ + FE++ GA+ LD G+ + + + + R+ E
Sbjct: 886 EEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVAD--EVFTDALFRQDEKLL 943
Query: 65 AAAPKSPVRELLEAEP 80
+ P L E EP
Sbjct: 944 SIWKNLPEHPLQEQEP 959
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,538,358
Number of Sequences: 52641
Number of extensions: 249234
Number of successful extensions: 628
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 21
length of query: 152
length of database: 24,830,863
effective HSP length: 79
effective length of query: 73
effective length of database: 20,672,224
effective search space: 1509072352
effective search space used: 1509072352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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