GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001835-TA|BGIBMGA001835-PA|IPR001159|Double-stranded RNA
binding, IPR000999|Ribonuclease III
         (152 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p...   115   1e-26
AC006701-4|AAK68403.2|  606|Caenorhabditis elegans Hypothetical ...    27   4.4  
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    27   5.8  
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ...    27   5.8  

>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
            protein 1 protein.
          Length = 1845

 Score =  115 bits (277), Expect = 1e-26
 Identities = 60/134 (44%), Positives = 82/134 (61%), Gaps = 2/134 (1%)

Query: 11   EDEME--QAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAP 68
            E+E++  Q ED+EVPKA+GD+FESVAGAI+LDSG +L   W+    +M   +E   A  P
Sbjct: 1707 EEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGTIELCCANPP 1766

Query: 69   KSPVRELLEAEPDTAKFGKPERLADGRRVRVCVEXXXXXXXXXXXXNYRIAKGTAARCAL 128
            +SP+REL+E E    +F K ER+ +  +VRV VE            NYRIAK TAA+ AL
Sbjct: 1767 RSPIRELMEFEQSKVRFSKMERILESGKVRVTVEVVNNMRFTGMGRNYRIAKATAAKRAL 1826

Query: 129  RHLRRGRCSARPPP 142
            ++L +     R  P
Sbjct: 1827 KYLHQIEQQRRQSP 1840


>AC006701-4|AAK68403.2|  606|Caenorhabditis elegans Hypothetical
           protein Y104H12D.3 protein.
          Length = 606

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 1   MLGRQHYLIHEDEMEQAEDVEVPKALGDLF 30
           M+G + Y+ H D   + ED+++   L DLF
Sbjct: 133 MMGERRYMQHYDPQTREEDMKLSAKLFDLF 162


>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
            protein R148.3a protein.
          Length = 1115

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 125  RCALRHLRRGRCSARPPPHTHSPY 148
            + A  H RR R   R PP  H PY
Sbjct: 1009 QAAPSHRRRSRSHGRQPPSFHDPY 1032


>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
            protein R148.3b protein.
          Length = 1130

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 125  RCALRHLRRGRCSARPPPHTHSPY 148
            + A  H RR R   R PP  H PY
Sbjct: 1021 QAAPSHRRRSRSHGRQPPSFHDPY 1044


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,617,773
Number of Sequences: 27539
Number of extensions: 114653
Number of successful extensions: 259
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 4
length of query: 152
length of database: 12,573,161
effective HSP length: 75
effective length of query: 77
effective length of database: 10,507,736
effective search space: 809095672
effective search space used: 809095672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)