GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001835-TA|BGIBMGA001835-PA|IPR001159|Double-stranded RNA
binding, IPR000999|Ribonuclease III
         (152 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   2.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   2.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   2.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 125  RCALRHLRRGRCSARPPPHTHS 146
            RCA    +  + S +PPP+THS
Sbjct: 1119 RCAALTSQSLQVSWQPPPNTHS 1140


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 125  RCALRHLRRGRCSARPPPHTHS 146
            RCA    +  + S +PPP+THS
Sbjct: 1115 RCAALTSQSLQVSWQPPPNTHS 1136


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 49  WKSYGRLMGRELEAFSAAAPKSP--VRELLEAEPDTAKF 85
           + S+G+++  E   FS   PK P  + E    + DT K+
Sbjct: 346 YSSFGKILATEPTLFSNVTPKFPRNIDEYNNNDLDTKKW 384


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 28  DLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPVRELLEAEPDTAKFGK 87
           +++      +F++S + + A   S GR+       F+   P+   +E  E + D+A  G 
Sbjct: 6   NIWTLAVNVLFVNSFLFVIAAQDSSGRI-------FTICVPEIYSKECDEMKKDSAVKGI 58

Query: 88  PERLADGRRVRVCVE 102
           P     GR    C+E
Sbjct: 59  PVSCISGRDRYECIE 73


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 28  DLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPVRELLEAEPDTAKFGK 87
           +++      +F++S + + A   S GR+       F+   P+   +E  E + D+A  G 
Sbjct: 6   NIWTLAVNVLFVNSFLFVIAAQDSSGRI-------FTICVPEIYSKECDEMKKDSAVKGI 58

Query: 88  PERLADGRRVRVCVE 102
           P     GR    C+E
Sbjct: 59  PVSCISGRDRYECIE 73


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 28  DLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPVRELLEAEPDTAKFGK 87
           +++      +F++S + + A   S GR+       F+   P+   +E  E + D+A  G 
Sbjct: 6   NIWTLAVNVLFVNSFLFVIAAQDSSGRI-------FTICVPEIYSKECDEMKKDSAVKGI 58

Query: 88  PERLADGRRVRVCVE 102
           P     GR    C+E
Sbjct: 59  PVSCISGRDRYECIE 73


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,788
Number of Sequences: 429
Number of extensions: 1308
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 152
length of database: 140,377
effective HSP length: 53
effective length of query: 99
effective length of database: 117,640
effective search space: 11646360
effective search space used: 11646360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)