Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001834-TA|BGIBMGA001834-PA|IPR000999|Ribonuclease III
         (157 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p...   148   2e-36
Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical p...    50   6e-07
AF160248-1|AAD45518.1|  860|Caenorhabditis elegans ribonuclease ...    50   6e-07
AC006656-3|AAF39882.1|  549|Caenorhabditis elegans Hypothetical ...    33   0.093
AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical ...    32   0.21 
AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily a...    31   0.37 
U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class c...    30   0.66 
U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class c...    30   0.66 
U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class c...    30   0.66 
AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.      30   0.66 
AF077546-1|AAC26314.1|  354|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z81549-3|CAB04468.1|  288|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z48585-4|CAA88480.1|  476|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
            protein 1 protein.
          Length = 1845

 Score =  148 bits (358), Expect = 2e-36
 Identities = 68/113 (60%), Positives = 89/113 (78%)

Query: 12   YEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKR 71
            + QLE  + YRF++R+ L+QA THAS+  N +T CYQRLEFLGDA+LDY+ITR+L+ED R
Sbjct: 1578 FTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSR 1637

Query: 72   CHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEE 124
             +SPG LTDLRSALVNNTIFA+LA +  F K+F  M PGL  +++K+VK+  E
Sbjct: 1638 QYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSE 1690



 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 48   QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHG 99
            +R E +GD+ L +  T +LY        G L+  RS  V+N     L  + G
Sbjct: 1348 ERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCNLYRLGKKLG 1399


>Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical
           protein F26E4.10 protein.
          Length = 1086

 Score = 50.4 bits (115), Expect = 6e-07
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 9   LHGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCY-QRLEFLGDAILDYLITRHLY 67
           L  +  LE  L  +F +  LL +A T  +   N LT  + QRLE+LGD++L  +++  LY
Sbjct: 830 LSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLY 889

Query: 68  EDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 103
                H  G ++ LR++LV+N   A +    GF ++
Sbjct: 890 RRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEF 925



 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 48  QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLA 95
           +RLE+LGDA+++ +++ HLY     H  G L   R+ALV N   ATLA
Sbjct: 691 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLA 738



 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 10/47 (21%)

Query: 16  ERVLQYRFRDRSLLLQAMTHAS----------HHRNVLTDCYQRLEF 52
           E V++Y+F DR ++  A+ H+S          H +N++T+C  R ++
Sbjct: 611 EEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKY 657


>AF160248-1|AAD45518.1|  860|Caenorhabditis elegans ribonuclease
           protein.
          Length = 860

 Score = 50.4 bits (115), Expect = 6e-07
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 9   LHGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCY-QRLEFLGDAILDYLITRHLY 67
           L  +  LE  L  +F +  LL +A T  +   N LT  + QRLE+LGD++L  +++  LY
Sbjct: 604 LSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLY 663

Query: 68  EDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKY 103
                H  G ++ LR++LV+N   A +    GF ++
Sbjct: 664 RRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEF 699



 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 48  QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLA 95
           +RLE+LGDA+++ +++ HLY     H  G L   R+ALV N   ATLA
Sbjct: 465 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLA 512



 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 10/47 (21%)

Query: 16  ERVLQYRFRDRSLLLQAMTHAS----------HHRNVLTDCYQRLEF 52
           E V++Y+F DR ++  A+ H+S          H +N++T+C  R ++
Sbjct: 385 EEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKY 431


>AC006656-3|AAF39882.1|  549|Caenorhabditis elegans Hypothetical
           protein H12I13.3 protein.
          Length = 549

 Score = 33.1 bits (72), Expect = 0.093
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 99  GFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEVTDSSYVQWLRTDKSRVHTPSSN 155
           GF+     + PG NE +  ++++  EN   + EE  D  Y +  R  + R+H    N
Sbjct: 122 GFNVEIEMIKPGTNETINFFIQL--ENSRLLQEEDRDDFYTEKCRKIEDRIHRQELN 176


>AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical
           protein Y39H10A.2 protein.
          Length = 740

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 10  HGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYED 69
           H  E +E++ +Y+  D  L+     H++ + ++  +C++ L FLG  ++D    R+    
Sbjct: 41  HPIEVMEQLEKYKTSD--LIAALGIHSNANYSISQECHEELSFLGYGVID--AARYARHH 96

Query: 70  KRCHSPGALTD 80
                P ++TD
Sbjct: 97  STAAVPASMTD 107


>AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 40 protein.
          Length = 714

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 10  HGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYED 69
           H  E +E++ +Y+  D  L+     H+     +  +C++ L FLG  ++D  + RH+ + 
Sbjct: 38  HPREVMEQLEKYKTSD--LIAALGIHSFSKYTISEECHEELAFLGYGMID--VARHV-KH 92

Query: 70  KRCHSPGALTDL 81
           +   +P  +TD+
Sbjct: 93  QTTAAPSTMTDV 104


>U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform c protein.
          Length = 667

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 1   MCECVER-ELHGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQR-----LEFLG 54
           +C  + R + HG+E L + LQY  +DR    +A+ H       +  C+ R     LE  G
Sbjct: 571 LCRQIPRIDAHGFELLMKFLQYEGKDRVSAAEAVKHPFLRTIAVKCCHLRDEQSVLEADG 630

Query: 55  DAILDYLITRHLYEDKRCHSPGAL 78
             I   L+    +   R H  G L
Sbjct: 631 IHIERELLASDHHHSSRRHHRGTL 654


>U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform b protein.
          Length = 700

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 1   MCECVER-ELHGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQR-----LEFLG 54
           +C  + R + HG+E L + LQY  +DR    +A+ H       +  C+ R     LE  G
Sbjct: 604 LCRQIPRIDAHGFELLMKFLQYEGKDRVSAAEAVKHPFLRTIAVKCCHLRDEQSVLEADG 663

Query: 55  DAILDYLITRHLYEDKRCHSPGAL 78
             I   L+    +   R H  G L
Sbjct: 664 IHIERELLASDHHHSSRRHHRGTL 687


>U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform a protein.
          Length = 577

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 1   MCECVER-ELHGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQR-----LEFLG 54
           +C  + R + HG+E L + LQY  +DR    +A+ H       +  C+ R     LE  G
Sbjct: 481 LCRQIPRIDAHGFELLMKFLQYEGKDRVSAAEAVKHPFLRTIAVKCCHLRDEQSVLEADG 540

Query: 55  DAILDYLITRHLYEDKRCHSPGAL 78
             I   L+    +   R H  G L
Sbjct: 541 IHIERELLASDHHHSSRRHHRGTL 564


>AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.
          Length = 577

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 1   MCECVER-ELHGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQR-----LEFLG 54
           +C  + R + HG+E L + LQY  +DR    +A+ H       +  C+ R     LE  G
Sbjct: 481 LCRQIPRIDAHGFELLMKFLQYEGKDRVSAAEAVKHPFLRTIAVKCCHLRDEQSVLEADG 540

Query: 55  DAILDYLITRHLYEDKRCHSPGAL 78
             I   L+    +   R H  G L
Sbjct: 541 IHIERELLASDHHHSSRRHHRGTL 564


>AF077546-1|AAC26314.1|  354|Caenorhabditis elegans Hypothetical
           protein T08E11.6 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 61  LITRHLYEDKRCHSPGALTDLRSALVNNTIFATLA----ARHGFHKYFRHMSPGLNEVLK 116
           +I R++ +    +S GA   L   L +N  F  L          + + +H   G NE+L 
Sbjct: 210 IIARNVEKFTMENSDGAQVQLNDLLASNAWFIQLTNMSLPNRQINLFLKHWIAGSNEMLC 269

Query: 117 KYVKIQEENGHSISEEV 133
            +V  Q  NG   +E V
Sbjct: 270 GFVINQFNNGAGYNEAV 286


>Z81549-3|CAB04468.1|  288|Caenorhabditis elegans Hypothetical
           protein F55C9.4 protein.
          Length = 288

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 78  LTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKK-YVKIQEEN 125
           L+DL +    N +  T      F+ + +H   G NEV++  YV+I+  N
Sbjct: 185 LSDLLAMRCTNVLLCTPIYPEEFNLFLKHWIKGANEVVETLYVEIEYVN 233


>Z48585-4|CAA88480.1|  476|Caenorhabditis elegans Hypothetical
           protein ZK673.4 protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 101 HKYFRHMSPGLNEVLKKYVKIQE-ENGHSISEEVTDSSYVQWLRTDKSRVHTPSSNT 156
           H++F+HM     E   K VK++E E      E+ + SSY+       +    PS  T
Sbjct: 331 HEFFQHMLQDQEEHEAKRVKLEEPEFEEHFDEQPSTSSYMATATATATATPFPSKMT 387


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
           protein W05B2.4 protein.
          Length = 2265

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 9   LHGYEQLERVLQYRFRDRSLLLQAMTHAS-HHRNVLTDCYQRLEFLGDAILDYLITRHLY 67
           LH + + +R LQYR  D S++L          +N + D  ++   + D + +  IT+H+ 
Sbjct: 443 LHDFRKYDRALQYRSIDPSMMLSNKAQVDLMLQNEIGDSVRQFVEVYDKVFE--ITQHIS 500

Query: 68  ED 69
            D
Sbjct: 501 LD 502


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,973,162
Number of Sequences: 27539
Number of extensions: 148446
Number of successful extensions: 358
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 19
length of query: 157
length of database: 12,573,161
effective HSP length: 76
effective length of query: 81
effective length of database: 10,480,197
effective search space: 848895957
effective search space used: 848895957
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)