GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001834-TA|BGIBMGA001834-PA|IPR000999|Ribonuclease III
         (157 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   3.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   8.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   8.5  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 1   MCECVERELHGYEQLERVLQYRFRDRSLLL 30
           MC+CV  E     +  + L+++F  ++L+L
Sbjct: 256 MCDCVRSEASKVVKNAQKLRHKFDLKTLVL 285


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 129 ISEEVTDSSYVQWLRTDKSRVHT 151
           + EE+ D    +W + D S+  T
Sbjct: 217 VKEEIEDEPDHKWKKNDSSKKKT 239


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 107 MSPGLNEVLKKYVKIQEENGHSISEEV 133
           +SP   E++ + V  Q E  H   E+V
Sbjct: 311 ISPEQEELIHRLVYFQNEYEHPSEEDV 337


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,454
Number of Sequences: 317
Number of extensions: 1422
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 157
length of database: 114,650
effective HSP length: 52
effective length of query: 105
effective length of database: 98,166
effective search space: 10307430
effective search space used: 10307430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)