GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001834-TA|BGIBMGA001834-PA|IPR000999|Ribonuclease III
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    71   8e-14
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    37   0.001
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    25   4.0  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   4.0  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   4.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    24   9.3  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 70.9 bits (166), Expect = 8e-14
 Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)

Query: 15   LERVLQYRFRDRSLLLQAMTHASH-HRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCH 73
            +E  + Y F+++ LL  A  H S   +  + + YQ+LEFLGDA+LDY+I ++LY+     
Sbjct: 1086 IEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNA 1145

Query: 74   SPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISE 131
            + G LTD +S  V N   + +      HKY +H S  + + + +Y ++ E    + SE
Sbjct: 1146 TSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASE 1203


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 41  NVLTDCY-QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHG 99
           N L D + +RLEFLGD+  +   TR ++        G+L+ LR+  V N      A  +G
Sbjct: 164 NELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGNESADKFARLYG 223

Query: 100 FHK 102
           F K
Sbjct: 224 FDK 226


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 73  HSPGALTDLRSALVNNTIFATLAARHG-FHKYFRHMSPGLNEVLKKYVKIQEENGHSISE 131
           HS   L ++ + +++ T    L    G F  Y R         +K Y+K QEE  H    
Sbjct: 275 HSQDFLNNVCTNIIDLTSKKQLVYYGGNFDIYMRTKEENETNQMKAYLKQQEEIAHIKKF 334

Query: 132 EVTDSSYVQWLRTDKSR 148
             +  +Y   +R  KS+
Sbjct: 335 IASAGTYANLVRQAKSK 351


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 43  LTDCYQRLEFLGDAILD--YLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGF 100
           + D + R+ F+ + + D    ++RH    +   S   LTD+      +  F T      F
Sbjct: 482 IRDVFDRIRFVLNGLTDNNVEVSRHNNIGRTAESVTHLTDMLLITTKDVAFVTDRVNFEF 541

Query: 101 HKYFRHMSPGLNEVLKK 117
            +Y       LN +L +
Sbjct: 542 QRYQDTHRQDLNRILNR 558


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 10  HGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLG 54
           HG  + E VL  RF  + + L+A    S    +  DC  +L F G
Sbjct: 862 HGSNRREEVLLLRFISQVIKLEAALVNSSQDLLSDDCVWKLLFTG 906


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 117 KYVKIQEENGHSISEEVTDSSYVQWLRTDKSRVHTPSSN 155
           K+++I+  N  SI       + + W   +KSRV  PSSN
Sbjct: 243 KFIRIEFSNNGSIV-----GANLDWYLLEKSRVIHPSSN 276


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,814
Number of Sequences: 5004
Number of extensions: 28762
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 7
length of query: 157
length of database: 2,362,478
effective HSP length: 67
effective length of query: 90
effective length of database: 2,027,210
effective search space: 182448900
effective search space used: 182448900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)