Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001834-TA|BGIBMGA001834-PA|IPR000999|Ribonuclease III
(157 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 108 2e-24
10_08_0429 + 17845303-17845431,17845508-17845684,17845782-178458... 106 9e-24
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 103 5e-23
03_05_0154 - 21302056-21302418,21302920-21303198,21304745-213051... 101 2e-22
09_02_0404 - 8592872-8593231,8593735-8594004,8595551-8595964,859... 100 6e-22
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 86 1e-17
06_02_0336 + 14613185-14613610,14615746-14615892,14615976-14616302 77 9e-15
05_03_0243 + 10845284-10845676,10846722-10846889,10846946-108470... 71 4e-13
01_05_0306 - 20662851-20663093,20663180-20663320,20666640-20667026 50 9e-07
03_06_0729 - 35771936-35772050,35772469-35772995 29 1.7
04_03_0112 - 11369013-11369193,11369194-11369354,11370281-113703... 29 2.3
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 28 3.0
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087... 28 3.0
12_01_1047 + 10765856-10767784 27 5.3
11_08_0024 + 27747449-27747940,27748141-27750177 27 5.3
11_08_0009 + 27600881-27602592,27602665-27603008,27603159-276038... 27 5.3
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 27 7.0
01_01_1159 + 9224331-9224473,9224586-9224727,9225412-9225483,922... 27 7.0
11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741 27 9.2
01_06_0951 + 33301850-33302175,33302318-33303216,33303327-33303934 27 9.2
>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 108 bits (259), Expect = 2e-24
Identities = 56/123 (45%), Positives = 84/123 (68%), Gaps = 3/123 (2%)
Query: 3 ECVERELHGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLI 62
E + R ++ ++ L+ VL F+++ LL++A+THAS + ++ CYQRLEF+GDA+LD+LI
Sbjct: 1530 ESIMRSIN-FDTLKGVLGIEFQNKGLLVEAITHASRPSSGVS-CYQRLEFVGDAVLDHLI 1587
Query: 63 TRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVK-I 121
TRHL+ PG LTDLR+A VNN FA +A +H H + RH S L ++++VK +
Sbjct: 1588 TRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDV 1647
Query: 122 QEE 124
QEE
Sbjct: 1648 QEE 1650
Score = 44.8 bits (101), Expect = 3e-05
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 14 QLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCH 73
QL+ ++ Y + +L+A+T AS + CY+R E LGDA L ++++R L+
Sbjct: 1323 QLKDIIDYPV-PATKILEALTAASCQETL---CYERAELLGDAYLKWVVSRFLFLKYPQK 1378
Query: 74 SPGALTDLRSALVNNTIFATLAARHGFHKYFR 105
G LT +R +V+N + A Y +
Sbjct: 1379 HEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQ 1410
>10_08_0429 + 17845303-17845431,17845508-17845684,17845782-17845895,
17846386-17846520,17847659-17847790,17847919-17848071,
17848574-17848709,17849338-17849443,17849538-17849730,
17849803-17849963,17850227-17850442,17850732-17850997,
17851505-17851779,17851871-17852327,17853973-17854055,
17854260-17854469,17854897-17855373,17855462-17855743,
17855910-17856236,17856418-17856507,17856788-17856899,
17857004-17857104,17857524-17857568
Length = 1458
Score = 106 bits (254), Expect = 9e-24
Identities = 54/117 (46%), Positives = 73/117 (62%)
Query: 4 CVERELHGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLIT 63
C +++ E+LE L+Y F + LLL+A+TH S + CYQRLEFLGD++LD L+T
Sbjct: 1096 CSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLT 1155
Query: 64 RHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVK 120
RHLY PG LTDLRSALV+N FA R+ H + +H S L E + +YV+
Sbjct: 1156 RHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVR 1212
Score = 32.7 bits (71), Expect = 0.14
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 48 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHG 99
+RLE LGD++L Y++ L+ G L+D+RS V N ATL +HG
Sbjct: 928 ERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCN---ATL-HKHG 975
>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 103 bits (248), Expect = 5e-23
Identities = 53/124 (42%), Positives = 75/124 (60%)
Query: 12 YEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKR 71
+E LE L Y F + LL++A+TH S CY+RLEFLGDA+LD L+TR+L+ +
Sbjct: 1175 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1234
Query: 72 CHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISE 131
+ G LTDLRSA VNN FA +A +H FH + +H S L + + +YV E + E
Sbjct: 1235 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVE 1294
Query: 132 EVTD 135
++D
Sbjct: 1295 LLSD 1298
>03_05_0154 -
21302056-21302418,21302920-21303198,21304745-21305158,
21305443-21305592
Length = 401
Score = 101 bits (243), Expect = 2e-22
Identities = 55/123 (44%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 8 ELHGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLY 67
E LE +L Y+F D LLL+A+TH S+ + T CYQRLEFLGDAILD+L T + Y
Sbjct: 148 EFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYY 207
Query: 68 EDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGH 127
+P LTDLRSA VNN +A A + G +K+ H S L+ + Y+ EE G
Sbjct: 208 SKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYL---EEFGQ 264
Query: 128 SIS 130
S +
Sbjct: 265 SFT 267
>09_02_0404 -
8592872-8593231,8593735-8594004,8595551-8595964,
8596249-8596398
Length = 397
Score = 100 bits (239), Expect = 6e-22
Identities = 50/105 (47%), Positives = 66/105 (62%)
Query: 15 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 74
LE +L Y+F D LLL+A+TH S+ + T CYQRLEFLGDAILD+L T + Y +
Sbjct: 155 LEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCT 214
Query: 75 PGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYV 119
P LTDLRSA VNN +A A + G +K+ H S L+ + Y+
Sbjct: 215 PELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYL 259
>04_04_0468 - 25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 85.8 bits (203), Expect = 1e-17
Identities = 48/120 (40%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 15 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHS 74
LE ++ Y+F+ + LLLQA H S ++ CYQRLEFLGDA+L+Y+IT +LY
Sbjct: 1117 LEELIGYKFKHKGLLLQAFVHPSFSQHS-GGCYQRLEFLGDAVLEYVITSYLYSTYPDIK 1175
Query: 75 PGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKK---YVKIQEENGHSISE 131
PG +TDLRS V N A A HK+ S L + K YVK+ + E
Sbjct: 1176 PGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEE 1235
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 48 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 105
+R E LGDA L Y++ RH + G LT RS +VNN+ L+ R Y R
Sbjct: 943 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1000
>06_02_0336 + 14613185-14613610,14615746-14615892,14615976-14616302
Length = 299
Score = 76.6 bits (180), Expect = 9e-15
Identities = 38/107 (35%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 15 LERVLQYRFRDRSLLLQAMTHASHHRNVLTDC-YQRLEFLGDAILDYLITRHLYEDKRCH 73
+E +L Y FRD++L+ +A+TH S + Y+RLE+LGDA+L +++R ++
Sbjct: 42 VESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQL 101
Query: 74 SPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVK 120
PG LT LR+A V+ A +A HG H + RH +P L+ + +++
Sbjct: 102 QPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIE 148
>05_03_0243 +
10845284-10845676,10846722-10846889,10846946-10847044,
10847252-10847626
Length = 344
Score = 70.9 bits (166), Expect = 4e-13
Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 14 QLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCH 73
++ER+L+Y+FRD LL +A+TH S + ++ YQRLEF+GD+ L + LY
Sbjct: 33 RVERLLRYQFRDGRLLEEALTHQSFADDAVS--YQRLEFVGDSALGLAFSNFLYLTNPTL 90
Query: 74 SPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVK-IQEENGHSIS 130
PG L+ LR+A ++ A +A RH + R P L+ ++ ++++ +++E +S
Sbjct: 91 GPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLS 148
>01_05_0306 - 20662851-20663093,20663180-20663320,20666640-20667026
Length = 256
Score = 50.0 bits (114), Expect = 9e-07
Identities = 38/97 (39%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 14 QLERVLQ-YRFRDRSLLL--QAMTHASHHRNVLTDC--YQRLEFLGDAILDYLITRHLYE 68
++ER L Y FRD LL A+TH+ H R+ +QRLEFLGDA L Y
Sbjct: 23 EVERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFYR 82
Query: 69 DKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFR 105
D G LT LRSA V+ A +A R + R
Sbjct: 83 DDPGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLR 119
>03_06_0729 - 35771936-35772050,35772469-35772995
Length = 213
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 15 LERVLQYRFRDRSLLLQAMTHASHHR 40
L+ + YRF LL +AMTHAS+ R
Sbjct: 37 LQNQIAYRFHAPDLLRRAMTHASYSR 62
>04_03_0112 -
11369013-11369193,11369194-11369354,11370281-11370383,
11370467-11370534,11372340-11372393,11374173-11374251,
11376054-11376133,11376584-11376692,11376813-11376913,
11378407-11378526,11379613-11379642,11380591-11380689
Length = 394
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 24 RDRSLLLQAMTHASHHRN 41
RDRSL+LQ + HA+ HR+
Sbjct: 289 RDRSLVLQELQHAAEHRS 306
>03_05_0754 +
27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 28.3 bits (60), Expect = 3.0
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 23 FRDR-SLLLQAMTHASHHRNVLTDCYQRLEFL-GDAILDYLITRHLYEDKRCHSPGALTD 80
FR R + QA+ H R +L L+ L G+ + DY R E G +
Sbjct: 257 FRSRLEMCSQALAHEEGRRKLLEAEMSELKHLYGNVVSDYEEARSTIESLAAKRDGEIAS 316
Query: 81 LRSAL 85
LRS+L
Sbjct: 317 LRSSL 321
>02_05_0999 +
33405982-33408279,33408356-33408466,33408551-33408703,
33408870-33409033,33409113-33409210,33409296-33409474,
33409588-33409675,33410285-33410451
Length = 1085
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 67 YEDKRCHSPGALTDLRSALVNNTIFATLA-----ARHGFHKYFRHMS 108
YED R H PG+ + +V+N+ +L+ + H FH H+S
Sbjct: 403 YEDPRLHMPGSARAMEPYIVDNSSVTSLSRSSHESPHYFHGSSEHVS 449
>12_01_1047 + 10765856-10767784
Length = 642
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 24 RDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHL 66
RD L+ A T H+ + + YQR+ GD ++ + HL
Sbjct: 282 RDYERLVWACTGEEHY-TIAKELYQRIRERGDGVISLSVCNHL 323
>11_08_0024 + 27747449-27747940,27748141-27750177
Length = 842
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 117 KYVKIQEENGHS-ISEEVTDSSYVQWLRTDKSRVHTP-SSNTG 157
KY+ + + HS ISE + D +QWL ++ + P SN G
Sbjct: 428 KYLDLSDNQLHSTISESIMDLEILQWLDLSENSLFGPIPSNIG 470
>11_08_0009 +
27600881-27602592,27602665-27603008,27603159-27603806,
27603908-27604296
Length = 1030
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 117 KYVKIQEENGHS-ISEEVTDSSYVQWLRTDKSRVHTP-SSNTG 157
KY+ + + HS ISE + D +QWL ++ + P SN G
Sbjct: 501 KYLDLSDNQLHSTISESIMDLEILQWLDLSENSLFGPIPSNIG 543
>01_03_0075 - 12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 9 LHGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQ 48
L GY Q + +++Y+ +L L M A RNV+ YQ
Sbjct: 1011 LRGYAQRDPLIEYKLEGYNLFLDMM--AQIRRNVIYSVYQ 1048
>01_01_1159 +
9224331-9224473,9224586-9224727,9225412-9225483,
9225853-9225933,9226031-9226144,9226770-9226826,
9227209-9227310,9227617-9227767,9227851-9227927,
9228721-9228828,9229684-9229754,9230546-9230687,
9230903-9231001,9231112-9231240,9231445-9231559,
9231786-9231853,9233410-9233523,9233587-9233703,
9234079-9234132,9234221-9234326,9235272-9235402,
9235489-9235557
Length = 753
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 138 YVQWLRTDKSRVHTP 152
YV+WL TDK +H P
Sbjct: 341 YVKWLNTDKKSLHDP 355
>11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741
Length = 375
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 105 RHMSPGLNEVLKKYVKIQEENGHSISEE 132
R +S L EVL+K V+ +EE H IS +
Sbjct: 3 RCISTNLAEVLQKKVEQKEEESHKISHD 30
>01_06_0951 + 33301850-33302175,33302318-33303216,33303327-33303934
Length = 610
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 55 DAILDYLITR----HLYEDKRCHSPGALTDLRSALVNNTIFA 92
D ++DY I+R + Y+ RC PG + +L A V F+
Sbjct: 544 DKLMDYAISRGASINQYKAPRCVRPGPVVELLDARVQGKYFS 585
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.134 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,508,542
Number of Sequences: 37544
Number of extensions: 160740
Number of successful extensions: 363
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 24
length of query: 157
length of database: 14,793,348
effective HSP length: 76
effective length of query: 81
effective length of database: 11,940,004
effective search space: 967140324
effective search space used: 967140324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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