Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001834-TA|BGIBMGA001834-PA|IPR000999|Ribonuclease III
(157 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 1e-24
SB_58124| Best HMM Match : Ribonuclease_3 (HMM E-Value=7e-28) 56 1e-08
SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42) 50 1e-06
SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15) 29 1.8
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026) 27 7.2
SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2060
Score = 109 bits (262), Expect = 1e-24
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 6 ERELHGYEQLERVLQYRFRDRSLLLQAMTHASHHR--NVLTDCYQRLEFLGDAILDYLIT 63
E +L +E L Y FRDR +LLQA+TH S+ R + + Y++LEFLGDA+LDYL+T
Sbjct: 1818 EHQLGELALVEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVT 1877
Query: 64 RHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVK 120
RH+ + SPGA+TDLRSA+VNN A L + FHK+ R MS L ++++ +V+
Sbjct: 1878 RHVLQRFPRLSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKIVRSFVR 1934
Score = 37.1 bits (82), Expect = 0.007
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 27 SLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALV 86
+L+L+A+T S N + D ++RLE GDA + Y I+ LY D + G L+ LR V
Sbjct: 1471 TLILRALTTTS--ANDIID-HERLEIYGDAFIKYAISELLYSDFPNVNEGRLSFLRGLRV 1527
Query: 87 NN 88
+N
Sbjct: 1528 SN 1529
>SB_58124| Best HMM Match : Ribonuclease_3 (HMM E-Value=7e-28)
Length = 602
Score = 56.4 bits (130), Expect = 1e-08
Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 51 EFLGDAILDYLITRHLYEDKRCHS--PGALTDLRSALVNNTIFATLAARHGFHKYFRHMS 108
EF L +T Y R + PG LTDLR ALVNN IFA +A +HGF+K MS
Sbjct: 462 EFSNKLYLIQALTHASYSQNRNTNLDPGELTDLRQALVNNNIFAEIAVKHGFNKSLFQMS 521
Query: 109 P-GLNE--VLKKYVKIQEENGHSISEE 132
P N+ V +VK +E G IS++
Sbjct: 522 PEWFNKIGVFVDHVKEREARGIQISKD 548
Score = 36.3 bits (80), Expect = 0.012
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 25 DRSLLLQAMTHASHHRNVLTDCY--QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLR 82
D LLLQA+T S D + +RLE LGDA L ++ LY + G LT +
Sbjct: 314 DSELLLQALTTKS-----AGDAFDLERLEMLGDAFLKQAVSIFLYCCYKDGDEGKLTKRK 368
Query: 83 SALVNNTIFATLAARHGFHKYFRH 106
++ ++N +A R G +Y ++
Sbjct: 369 TSQLSNRALYRVACRLGLPEYLQN 392
>SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)
Length = 618
Score = 49.6 bits (113), Expect = 1e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 48 QRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHM 107
QRLEFLGD++L ++++ LY+ H G LT LRS+LVN+ A +A + ++
Sbjct: 478 QRLEFLGDSVLQFVVSVFLYQHFPDHHEGHLTLLRSSLVNSRSQAEIARQLNLQEFINTG 537
Query: 108 SPGLNEVLKK 117
G+ V +K
Sbjct: 538 PTGVKNVREK 547
Score = 30.3 bits (65), Expect = 0.77
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 15 LERVLQYRFRDRSLLLQAMTHASHHRN 41
L+ L Y F+DR LL A++H S+H N
Sbjct: 48 LDAKLGYTFKDRMLLQLALSHPSYHLN 74
>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.1 bits (62), Expect = 1.8
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 57 ILDYLITRHLYEDK-RCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNE-- 113
I D I H+Y+ R H T + ++ +N ++ + +G H Y +HM + +
Sbjct: 117 IYDKHIRVHIYDKHIRVHIYNN-TYVYTSTINTYVYTSTTNTYGVHIYDKHMRVHIYDKH 175
Query: 114 ----VLKKYVKIQEENGHSISEEVTDSSYVQWLRTDKSRVH 150
+ K++++ + H I + D++YV + T +RVH
Sbjct: 176 MRVHIYDKHIRVHIYDKH-IRVHIYDNTYV-YTSTTNTRVH 214
>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
Length = 1277
Score = 29.1 bits (62), Expect = 1.8
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 32 AMTHASHHRNVLTDCYQRLEFLGDAILDYL-----ITRHLYEDKRCHSPGALTDLRSALV 86
A H + VL L+F D ILD I + E H A ++ L+
Sbjct: 1093 AARHCTTDHFVLFIALALLQFYRDIILDNKMDFTDIIKFFNEMAERHDAKAALEMARTLI 1152
Query: 87 NNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGH 127
F T G H YF +P +E+ + KI+ GH
Sbjct: 1153 TKQAF-TRCFSAGRHTYFSAKTPFNSEITGQEAKIKYNPGH 1192
>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 99 GFHKYFRHMSPGLNEVLKKYVKIQEENGHSI 129
GFHKYF S E +K +K Q E G I
Sbjct: 233 GFHKYFLKASHEEREHAEKLMKFQNERGGRI 263
>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1183
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 78 LTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEEN 125
+T++ ++NNT + L +K +SP + EVL K +K E+N
Sbjct: 771 MTEMGEDVINNTTSSGLVKCLAKNKKGYVLSPEVYEVLNKLLKSDEDN 818
>SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026)
Length = 766
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 45 DCYQRLEFLGDAILDYLITRHLYEDK 70
DC Q EFL D I+D+ + ++++ +K
Sbjct: 649 DCLQEGEFLNDVIIDFYL-KYIFHEK 673
>SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 993
Score = 26.6 bits (56), Expect = 9.5
Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 21 YRFRDRSLLLQAMTHASHHRNVLTDCYQRLE---FLGDAILDYL-ITRHLYEDKRCHSPG 76
+++RD+ + L+ +T++S + + L D Y + LG L++ + + E + H+ G
Sbjct: 479 HQYRDKLVRLRKLTYSSAYHHALPDFYHDVTARYLLGQLYLNFSPMWDPVIEVIKTHAQG 538
Query: 77 ALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSI 129
+ + + + +AA KY RH P Y ++ HS+
Sbjct: 539 KNVKIFWEVFRDHL--KMAANEA-EKYLRHPQPSETAETPSYTAGSADDLHSL 588
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Query: 108 SPGLNEVLKKYVKIQEENGHSISEEVTDSS 137
S G +EV+ + ++EENG+ +SEE +SS
Sbjct: 2736 SEGRDEVVNE---MEEENGNRVSEETVESS 2762
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 26.6 bits (56), Expect = 9.5
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 51 EFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLA--------ARHGFHK 102
EFL D I + ++ +E+ G + L + ++ ++A A GFHK
Sbjct: 112 EFLADTITRAVCRQNYHEESEA---GVNKQINLELYASYVYMSMAYHFDRDDVALPGFHK 168
Query: 103 YFRHMSPGLNEVLKKYVKIQEENGHSI 129
YF S E +K K Q + G I
Sbjct: 169 YFMKASHEEREHAEKLAKFQLQRGGRI 195
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.134 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,551,454
Number of Sequences: 59808
Number of extensions: 212387
Number of successful extensions: 747
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 737
Number of HSP's gapped (non-prelim): 15
length of query: 157
length of database: 16,821,457
effective HSP length: 76
effective length of query: 81
effective length of database: 12,276,049
effective search space: 994359969
effective search space used: 994359969
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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