GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001833-TA|BGIBMGA001833-PA|IPR003100|Argonaute and Dicer
protein, PAZ, IPR000999|Ribonuclease III
         (1126 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    48   6e-06
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    42   6e-04
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    31   0.91 
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    29   3.7  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    29   3.7  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    29   4.8  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    28   8.4  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 871 QALTMSNANDGINLERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLNLYR 930
           QALT + +    + +RLE  GD FLK   +  ++   P+  E +L   R K +SN NLY+
Sbjct: 916 QALTSAESQLNFDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYK 975

Query: 931 LGRNKQLGSRMIASKFEPHDNWLP 954
           +  + +L    +++  E   +W P
Sbjct: 976 VAIDCELPKYALSTPLEIR-HWCP 998



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 883  NLERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLNLYRLG 932
            N ++LE +GD+ L + I  YLY  +PN   G+L+  +S  V N +L  +G
Sbjct: 1118 NYQQLEFLGDAVLDYIIVQYLYKKYPNATSGELTDYKSFYVCNKSLSYIG 1167



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/35 (48%), Positives = 20/35 (57%)

Query: 1002 KSIADCVEALIGAYLLECGPRGALLFMSWLGIAVL 1036
            K IAD VEA IGA LL+ G   AL     L + +L
Sbjct: 1020 KRIADMVEASIGACLLDSGLDSALKICKSLSVGLL 1054


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 876 SNANDGINL--ERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLNLYRLGR 933
           SN N+ +++  ERLE +GDSF     T  ++   P + EG LS +R+K V N +  +  R
Sbjct: 161 SNPNELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGNESADKFAR 220


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 731 VLPPLITQKTTLNTPNVEAKVLEM-FPYGTRELRHADDGRLTLQSVERNKRFILNHL 786
           +LP L+ ++  L  P +   +LE   P    E+  +++ +L ++ +E+N + IL HL
Sbjct: 217 ILPVLVKRRKEL-APKIIGSLLEFHLPNPKDEIELSNESKLAIRCIEKNLKLILLHL 272


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 779 KRFILNHLKTNLKPEEIKSLFCFSMKDIDIDAPDYVDEKITNIGFDDGDKYNTGNEF-KP 837
           KRFI   L   +K ++  +L+ F   DI  + P++   ++ N+     D  ++ NE  K 
Sbjct: 267 KRFIEKALTNKVKNQDEDTLYTFQFSDISSEIPEH---QLANLDI-SADLSDSDNEIVKI 322

Query: 838 YY-EDDKGGQKREFDFDFQ 855
           +Y +++K  +K +  FD +
Sbjct: 323 WYGDEEKICKKAKPSFDLE 341


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 334 DSVFPSASHATFRDYYQNKYGVTITQSKQPLLDVDHTSARLNLLTPRYVNRKGVALPVSS 393
           D  FPSAS +  R  Y           K PL ++D  S++ +  T R  +     L  SS
Sbjct: 351 DDSFPSASSSPQRQAYMT--------DKMPLREIDVGSSQSSSKTARLNSSPKSTLKTSS 402

Query: 394 ERTRRAKRERLDQKQLLLPELCRAHPFAAP 423
            +TRR+   +  +K    P +    P   P
Sbjct: 403 VKTRRSHSAQSSRKVSDYPNMVVITPADLP 432


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 11/79 (13%)

Query: 527 KTINDILQEKEDAENGFEIGTWSNEMASSIPEDTDFDEYLEPLPPNLTFCTSASGSASWC 586
           K  ++I  +K+ +ENG    T ++E   S PE            P+  F  +A GS+ + 
Sbjct: 620 KPTSNIFNDKKTSENGLASSTVASESKPSAPES----------KPSSGFGNTA-GSSPFS 668

Query: 587 DPIQKPKSEFNPTRSYSVA 605
             + K   E  PT S+S A
Sbjct: 669 FNLTKESKEVPPTNSFSFA 687


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 427 ATVALPCALYRINALLIAEEIRRSVAVEVGLGIPHPHARPP--PLDFGWS 474
           A + +P    ++ ALL  +E+   + V+ G+ +P P   PP  PLD+ W+
Sbjct: 302 AGIYVPETFEKLPALL--QEVYEGL-VKKGVIVPQPEVAPPNIPLDYAWA 348


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,693,641
Number of Sequences: 5004
Number of extensions: 189329
Number of successful extensions: 462
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 11
length of query: 1126
length of database: 2,362,478
effective HSP length: 80
effective length of query: 1046
effective length of database: 1,962,158
effective search space: 2052417268
effective search space used: 2052417268
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)