Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001833-TA|BGIBMGA001833-PA|IPR003100|Argonaute and Dicer
protein, PAZ, IPR000999|Ribonuclease III
(1126 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 92 2e-18
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 91 5e-18
10_08_0429 + 17845303-17845431,17845508-17845684,17845782-178458... 83 1e-15
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 72 2e-12
05_03_0243 + 10845284-10845676,10846722-10846889,10846946-108470... 46 1e-04
09_02_0404 - 8592872-8593231,8593735-8594004,8595551-8595964,859... 41 0.005
03_05_0154 - 21302056-21302418,21302920-21303198,21304745-213051... 41 0.005
01_05_0306 - 20662851-20663093,20663180-20663320,20666640-20667026 35 0.32
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491... 32 2.3
06_02_0336 + 14613185-14613610,14615746-14615892,14615976-14616302 32 3.0
10_08_0734 + 20195434-20196225 31 4.0
07_01_0792 + 6166230-6166795,6166879-6166981,6167089-6167227,616... 31 4.0
04_04_0916 + 29390813-29391893,29402054-29402652 31 5.2
03_05_0100 - 20779387-20779641,20779824-20780629,20780757-207810... 31 6.9
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849 30 9.1
03_02_0987 - 12995754-12996347,12996440-12997684,12997772-129978... 30 9.1
>04_04_0468 - 25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 92.3 bits (219), Expect = 2e-18
Identities = 60/174 (34%), Positives = 94/174 (54%), Gaps = 11/174 (6%)
Query: 865 SPSVILQALTMSNANDGINLERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVS 924
S S IL+ALT + I+LER E +GD+FLK+ + + + + + EG+L+ RS V+
Sbjct: 923 SASGILEALTTEKCLERISLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVN 982
Query: 925 NLNLYRLGRNKQLGSRMIASKFEPHDNWLP--PCHEPPPTLQPKLNLNGQDKKQNVDSSP 982
N +LY L K+L + +FEP + P PC + N + + + +D P
Sbjct: 983 NSHLYELSIRKKLQVYIRDQQFEPTQFFAPGRPC-------KVVCNTDVEVRLHQMDIHP 1035
Query: 983 EN-VGCFIPYNLITQHSIPDKSIADCVEALIGAYLLECGPRGALLFMSWLGIAV 1035
+N C + + H + K IAD VE+LIGA+L+E G + A F+ W+GI V
Sbjct: 1036 DNRENCNLRCTR-SHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDV 1088
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 858 LEGHPGPSPSVILQALTMSN--ANDGINLERLETVGDSFLKFAITAYLYCAHPNVHEGKL 915
L G+ ++LQA + + G +RLE +GD+ L++ IT+YLY +P++ G++
Sbjct: 1120 LIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQI 1179
Query: 916 SHMRSKQVSNLNLYRLGRNKQLGSRMI 942
+ +RS V N +L K + +I
Sbjct: 1180 TDLRSLAVGNDSLAYAAVEKSIHKHLI 1206
Score = 41.1 bits (92), Expect = 0.005
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 341 SHATFRDYYQNKYGVTITQSKQPLLDVDHTSARLNLLTPRYVNRKGVALPVSSERTRRAK 400
S AT+ ++++ ++ + ++ +QPLL NLL R LP E T
Sbjct: 811 SGATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHNR--------LP---ETTESEG 859
Query: 401 RERLDQKQLLLPELC--RAHPFAAPLWAATVALPCALYRINALLIAEEIR 448
RE L+ L PELC + F+ + ++ LP +YR+ LL+A E++
Sbjct: 860 RELLEHFVELPPELCSLKVIGFSKDMGSSLSLLPSLMYRLENLLVAIELK 909
>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 91.1 bits (216), Expect = 5e-18
Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Query: 864 PSPSV-ILQALTMSNANDGINLERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQ 922
P P+ IL+ALT ++ + + ER E +GD++LK+ ++ +L+ +P HEG+L+ MR +
Sbjct: 1331 PVPATKILEALTAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQM 1390
Query: 923 VSNLNLYRLGRNKQLGSRMIASKFEPHDNWLPP---------CHEPPPTLQPKLNLNGQD 973
VSN+ LY+ NK L S + A +F P W P E P++ + + +
Sbjct: 1391 VSNMVLYQYALNKTLQSYIQADRFAP-SRWAAPGVLPVFDEESREYEPSIFDEESTGCEL 1449
Query: 974 KKQNVDSSPENV--GCFIPYNLITQHSIPDKSIADCVEALIGAYLLECGPRGALLFMSWL 1031
+K++ D +N+ I + + K++AD VEALIG Y + G A M W+
Sbjct: 1450 QKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWI 1509
Query: 1032 GI 1033
GI
Sbjct: 1510 GI 1511
Score = 58.8 bits (136), Expect = 2e-08
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 18/136 (13%)
Query: 322 FLVAEICWRLSPDSVFPSAS-------HATFRDYYQNKYGVTITQSKQPLLDVDHTSARL 374
F V IC+ ++ ++ FP ++++ DYY+ KYGV + KQPL+ S
Sbjct: 1199 FYVDCICYNMNAENSFPRKEGYLGPLEYSSYADYYKQKYGVELIYRKQPLIRARGVSYCK 1258
Query: 375 NLLTPRYVNRKGVALPVSSERTRRAKRERLDQKQ--LLLPELCRAHPFAAPLWAATVALP 432
NLL+PR+ + S+ E LD+ L PELC HP L LP
Sbjct: 1259 NLLSPRFEH---------SDAREGDFSENLDKTYYVYLPPELCLVHPLPGSLVRGAQRLP 1309
Query: 433 CALYRINALLIAEEIR 448
+ R+ ++L+A +++
Sbjct: 1310 SIMRRVESMLLAVQLK 1325
Score = 43.6 bits (98), Expect = 0.001
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 836 KPYYEDDKGGQKREFDFDFQPVLEGHPGPSPSVILQALT-MSNANDGINL-ERLETVGDS 893
KPY D R +FD + G + ++++A+T S + G++ +RLE VGD+
Sbjct: 1524 KPY--DIPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDA 1581
Query: 894 FLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLNLYRLGRNKQL 937
L IT +L+ + ++ G+L+ +R+ V+N N R+ +L
Sbjct: 1582 VLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKL 1625
>10_08_0429 + 17845303-17845431,17845508-17845684,17845782-17845895,
17846386-17846520,17847659-17847790,17847919-17848071,
17848574-17848709,17849338-17849443,17849538-17849730,
17849803-17849963,17850227-17850442,17850732-17850997,
17851505-17851779,17851871-17852327,17853973-17854055,
17854260-17854469,17854897-17855373,17855462-17855743,
17855910-17856236,17856418-17856507,17856788-17856899,
17857004-17857104,17857524-17857568
Length = 1458
Score = 83.0 bits (196), Expect = 1e-15
Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Query: 869 ILQALTMSNANDGINLERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLNL 928
IL+A+T + +LERLE +GDS LK+ + L+ +P HEG+LS MRSK V N L
Sbjct: 912 ILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATL 971
Query: 929 YRLGRNKQLGSRMIASKFEPHDNWLPPCHEPPPTLQPKLNLNGQDKKQNVDSSPENVGCF 988
++ G + L + + F+P W+ P + + ++ F
Sbjct: 972 HKHGIWRSLQGYVRDNAFDPR-RWVAPGQISLRPFPCNCGIETAFVPSHRRYIRDDPSFF 1030
Query: 989 IPYNLITQHS-IPDKSIADCVEALIGAYLLECGPRGALLFMSWLGIAV 1035
+ H + K+I+DCVEAL+GAY + G AL M W GI +
Sbjct: 1031 VGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGIDI 1078
Score = 44.8 bits (101), Expect = 4e-04
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 868 VILQALTMSNAND-GINL--ERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVS 924
++L+A+T + + G++ +RLE +GDS L +T +LY H +V G+L+ +RS VS
Sbjct: 1120 LLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVS 1179
Query: 925 NLN 927
N N
Sbjct: 1180 NEN 1182
>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 72.1 bits (169), Expect = 2e-12
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 19/172 (11%)
Query: 865 SPSVILQALTMSNANDGINLERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVS 924
S +IL+A+T ++ ++ERLE +GDS LK+A EG+LS +R +
Sbjct: 992 SSFLILEAITTLRCSEDFSMERLELLGDSVLKYA------------DEGQLSSIRCHMIC 1039
Query: 925 NLNLYRLGRNKQLGSRMIASKFEPHDNWLPPCH---EPPPTLQPKLNLNGQDKKQNVDSS 981
N LY+LG + + + + F+P WL P P P P + D +D
Sbjct: 1040 NATLYKLGIERNVQGYVRDAAFDPR-RWLAPGQLSIRPSPCECPVKSEVVTDDIHIIDDK 1098
Query: 982 PENVGCFIPYNLITQHSIPDKSIADCVEALIGAYLLECGPRGALLFMSWLGI 1033
+G + K+IADCVEA+IGAY G R A+ + WLGI
Sbjct: 1099 AIVLGKACDKG---HRWMCSKTIADCVEAIIGAYYAGGGLRAAMAVLKWLGI 1147
Score = 44.0 bits (99), Expect = 7e-04
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 885 ERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLN 927
ERLE +GD+ L +T YL+ +H + +EG+L+ +RS V+N N
Sbjct: 1211 ERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNEN 1253
Score = 43.6 bits (98), Expect = 0.001
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 331 LSPDSVFPSASHA------TFRDYYQNKYGVTITQSKQPLLDVDHTSARLNLLTPRYVNR 384
LS DS F AS TF +Y++ KYG+ + QPLL + + NLL+ ++ +
Sbjct: 861 LSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPHNLLSSKFRDE 920
Query: 385 KGVALPVSSERTRRAKRERLDQKQLLLPELCRAHPFAAPLWAATVALPCALYRINALLIA 444
V V + + + + PEL + + P +YRI +L +A
Sbjct: 921 GNV---VENMSNGTPVVNKTSNRVHMPPELLIPLDLPVEILRSFYLFPALMYRIESLTLA 977
Query: 445 EEIRRSV 451
++R +
Sbjct: 978 SQLRSEI 984
>05_03_0243 +
10845284-10845676,10846722-10846889,10846946-10847044,
10847252-10847626
Length = 344
Score = 46.4 bits (105), Expect = 1e-04
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 871 QALT-MSNANDGINLERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLNLY 929
+ALT S A+D ++ +RLE VGDS L A + +LY +P + G LS +R+ +S L
Sbjct: 50 EALTHQSFADDAVSYQRLEFVGDSALGLAFSNFLYLTNPTLGPGPLSTLRAANISTEKLA 109
Query: 930 RL 931
R+
Sbjct: 110 RV 111
>09_02_0404 - 8592872-8593231,8593735-8594004,8595551-8595964,
8596249-8596398
Length = 397
Score = 41.1 bits (92), Expect = 0.005
Identities = 21/38 (55%), Positives = 24/38 (63%)
Query: 998 SIPDKSIADCVEALIGAYLLECGPRGALLFMSWLGIAV 1035
SI K IAD VEALIGAYL G + A L M LG+ +
Sbjct: 93 SIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGMNI 130
Score = 34.3 bits (75), Expect = 0.56
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 885 ERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLNLYRLGRNKQ-LGSRMIA 943
+RLE +GD+ L T Y Y +P+ L+ +RS V+N N Y K L ++
Sbjct: 188 QRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNN-NCYAHAAVKSGLNKHILH 246
Query: 944 SKFEPH 949
S E H
Sbjct: 247 SSSELH 252
>03_05_0154 - 21302056-21302418,21302920-21303198,21304745-21305158,
21305443-21305592
Length = 401
Score = 41.1 bits (92), Expect = 0.005
Identities = 21/38 (55%), Positives = 24/38 (63%)
Query: 998 SIPDKSIADCVEALIGAYLLECGPRGALLFMSWLGIAV 1035
SI K IAD VEALIGAYL G + A L M LG+ +
Sbjct: 93 SIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGMNI 130
Score = 34.3 bits (75), Expect = 0.56
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 885 ERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLNLYRLGRNKQ-LGSRMIA 943
+RLE +GD+ L T Y Y +P+ L+ +RS V+N N Y K L ++
Sbjct: 188 QRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNN-NCYAHAAVKSGLNKHILH 246
Query: 944 SKFEPH 949
S E H
Sbjct: 247 SSSELH 252
>01_05_0306 - 20662851-20663093,20663180-20663320,20666640-20667026
Length = 256
Score = 35.1 bits (77), Expect = 0.32
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 885 ERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLNLYRLGRNKQLGSRMIAS 944
+RLE +GD+ L A Y P + +G L+ +RS VS L R+ ++L +
Sbjct: 62 QRLEFLGDAALGLAFATIFYRDDPGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLRRY 121
Query: 945 KFEPHDN 951
P D+
Sbjct: 122 NCAPQDH 128
>02_05_0967 -
33148283-33148524,33148602-33148881,33148959-33149151,
33149244-33149324,33149395-33149520,33149758-33150137,
33150367-33150394,33150816-33150979,33151920-33152039,
33152168-33152416
Length = 620
Score = 32.3 bits (70), Expect = 2.3
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 699 PEHIERFRSSVAAH--KEHITRNCLIQRDEPVGEVLPPLITQKTTLNTPNVEAKVLEMFP 756
PE F+ VA H + ++TR C + R + + ++ + N V K
Sbjct: 74 PEKFRNFQLQVAIHSMRSNLTRKCCLWRHKYIATIVVIWLVNWQCYNIAPVAEKEKIFVD 133
Query: 757 YGTRELRHADDGRLTLQSVERNKRFILNH-LKTNLKPEEIKSLFCFSMKDIDIDAPD 812
+G + H + + KR L N E+I S +C +++DID++A +
Sbjct: 134 FGCLYVCH---WKPLIWKFSSGKRTCARPMLYANDMEEDICSCYCGTIEDIDVNATE 187
>06_02_0336 + 14613185-14613610,14615746-14615892,14615976-14616302
Length = 299
Score = 31.9 bits (69), Expect = 3.0
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 881 GINLERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLNLYRL 931
G+ ERLE +GD+ L ++ ++ + + G L+ +R+ V L R+
Sbjct: 72 GVTYERLEYLGDAVLTCVVSREVFLTYGQLQPGPLTRLRAANVDKEKLARV 122
>10_08_0734 + 20195434-20196225
Length = 263
Score = 31.5 bits (68), Expect = 4.0
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 542 GFEIGTWSNEMASSIPEDTDFDEYLEPLPPNL--TFCTSASGSASWCDPIQKPKSEFNPT 599
GF G A S+ + +D + PPN T T+ +GSA S F+P+
Sbjct: 23 GFMCGGCGGSKAVSVSDGSDKQSPMATPPPNTSSTTTTTTTGSAGNKTTAAAGSSSFSPS 82
Query: 600 RSYSVADSD 608
Y D+D
Sbjct: 83 YDYDYVDTD 91
>07_01_0792 +
6166230-6166795,6166879-6166981,6167089-6167227,
6167641-6167918,6168448-6168612
Length = 416
Score = 31.5 bits (68), Expect = 4.0
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 812 DYVDEKITNIGFDD--GDKYNTGNEFKPYYEDDKGGQKREFDFDFQPVLEGHPGPSPSVI 869
D V E ++G + +++ + F+P Y G K ++ F ++ G P P P
Sbjct: 224 DAVKESAGHVGVEKYIAEQFGSWASFRPQYMIGSGNNKDCEEWFFDRIVRGRPVPIPGSG 283
Query: 870 LQALTMSNAND 880
+Q +S+ D
Sbjct: 284 MQVTNISHVRD 294
>04_04_0916 + 29390813-29391893,29402054-29402652
Length = 559
Score = 31.1 bits (67), Expect = 5.2
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 7/159 (4%)
Query: 308 VVTPWYRNQDQPQYFLVAEICWRL-SPDSVFPSASHATFRDYYQNKYGVTITQSKQP--- 363
+ TP + + A I W +P S+ P A F++ + + P
Sbjct: 17 IPTPHATEVELKDWESTAIIPWAAKAPASITPRDVEAIFKEEFHLREADVFVSRHHPEAF 76
Query: 364 LLDVDHTSARLNLLTPRYVNRKGVALPVSSERTRRAKR--ERLDQKQLLLPELCRAHPFA 421
L+ +H + L +V R GV L R+ ++ + + +L L + R H +
Sbjct: 77 LIKFEHQRHCVEALRKGFVKRHGVELHYVKWRSLKSALGVALMFRVRLYLDGIPR-HAWE 135
Query: 422 APLWAATVALPCALYRINALLIAEEIRRSVAVEVGLGIP 460
A + TVA CAL I LI R ++V G P
Sbjct: 136 ADIVERTVAKTCALESIETSLIHPPDTRWISVWAWTGNP 174
>03_05_0100 -
20779387-20779641,20779824-20780629,20780757-20781011,
20781107-20781221,20781301-20781353,20781517-20781777,
20782804-20782854,20783081-20783329,20784765-20784990,
20785968-20786132
Length = 811
Score = 30.7 bits (66), Expect = 6.9
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 745 PNVEAKVLEMFPYGTRELRHADDGRLTLQSVERNKRFILNHLKTNLKPEEIKSLFC---F 801
P V ++E P L L + SV+R++RFI H + EE K C +
Sbjct: 579 PPVFPHLIEKIPSIHSVLIFVSIKHLPIPSVDRSERFIFRH----VDKEEYKVFQCVARY 634
Query: 802 SMKDIDIDAPDYVDEKITNIGF--DDGDKYNTGNE 834
+D +A D+VD N+ + D + Y TG +
Sbjct: 635 GYRDPMEEAKDFVDALTENLQYYIRDVNFYTTGGD 669
>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
Length = 489
Score = 30.3 bits (65), Expect = 9.1
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 442 LIAEEIRRSVAVEVGLGI-PH-PHARPPP 468
LI E++RR VA GL + PH P RPPP
Sbjct: 94 LIEEDVRREVAFAHGLHVLPHDPFPRPPP 122
>03_02_0987 -
12995754-12996347,12996440-12997684,12997772-12997838,
12997982-12998073
Length = 665
Score = 30.3 bits (65), Expect = 9.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 104 LANEVGTDSCRLSLQVPAFPVYTRSGEVRVSLQHAPD 140
L EVGT S L + FP+ +RSG++R ++ A D
Sbjct: 40 LTVEVGTSSFALHKLLAQFPLVSRSGKIRRAVAEAKD 76
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.134 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,467,665
Number of Sequences: 37544
Number of extensions: 1302493
Number of successful extensions: 3165
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3132
Number of HSP's gapped (non-prelim): 33
length of query: 1126
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1036
effective length of database: 11,414,388
effective search space: 11825305968
effective search space used: 11825305968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)
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