Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001833-TA|BGIBMGA001833-PA|IPR003100|Argonaute and Dicer
protein, PAZ, IPR000999|Ribonuclease III
(1126 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p... 128 2e-29
Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical p... 40 0.013
AF160248-1|AAD45518.1| 860|Caenorhabditis elegans ribonuclease ... 40 0.013
Z73906-6|CAA98113.1| 824|Caenorhabditis elegans Hypothetical pr... 31 3.5
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr... 30 8.1
>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
protein 1 protein.
Length = 1845
Score = 128 bits (309), Expect = 2e-29
Identities = 67/171 (39%), Positives = 93/171 (54%), Gaps = 13/171 (7%)
Query: 297 FVFDPDKYKEAVVTPWYRNQDQPQYFLVAEICWRLSPDSVFPSASHATFRDYYQNKYGVT 356
+ F+ + YK+A+V PWYRN +QP ++ VAEI P S FP TF +Y+ KY +
Sbjct: 803 YKFNAEDYKDAIVMPWYRNLEQPVFYYVAEILPEWRPSSKFPDTHFETFNEYFIKKYKLE 862
Query: 357 ITQSKQPLLDVDHTSARLNLLTPRYVNRKGVALPVSSERTRRAKR-------------ER 403
I Q LLDVD TS RLNLL PR N+ + VS+ T +
Sbjct: 863 IYDQNQSLLDVDFTSTRLNLLQPRIQNQPRRSRTVSNSSTSNIPQASASDSKESNTSVPH 922
Query: 404 LDQKQLLLPELCRAHPFAAPLWAATVALPCALYRINALLIAEEIRRSVAVE 454
Q+Q+L+PEL HP +A LW ALP YR+N LL+ +E+R ++ V+
Sbjct: 923 SSQRQILVPELMDIHPISATLWNVIAALPSIFYRVNQLLLTDELRETILVK 973
Score = 126 bits (304), Expect = 9e-29
Identities = 61/115 (53%), Positives = 80/115 (69%), Gaps = 1/115 (0%)
Query: 863 GPSPSVILQALTMSNANDGINLERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQ 922
G SP ++L ALT SNA DG++LER ET+GDSFLKFA T YLY + HEGKLS RSK+
Sbjct: 1326 GVSPCLLLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKE 1385
Query: 923 VSNLNLYRLGRNKQLGSRMIASKFEPHDNWLPPCHEPPPTLQPKLNLNGQDKKQN 977
VSN NLYRLG+ + ++A+KF+ HD+WLPPC+ P + N + ++K N
Sbjct: 1386 VSNCNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYIPTCDFKAP-NTDDAEEKDN 1439
Score = 64.1 bits (149), Expect = 5e-10
Identities = 28/50 (56%), Positives = 36/50 (72%)
Query: 989 IPYNLITQHSIPDKSIADCVEALIGAYLLECGPRGALLFMSWLGIAVLPR 1038
+PYNL+TQ I DKSIAD VEALIG +LL GP L M+W+G+ V+ +
Sbjct: 1493 LPYNLLTQQHISDKSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKVIQK 1542
Score = 32.3 bits (70), Expect = 2.0
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 848 REFDFDFQPVLEGHPGPSPSVILQALT-MSNANDGIN--LERLETVGDSFLKFAITAYLY 904
++F F G+ + ++QA T S N+ + +RLE +GD+ L + IT YL+
Sbjct: 1574 QQFQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLF 1633
Query: 905 CAHPNVHEGKLSHMRSKQVSN 925
G L+ +RS V+N
Sbjct: 1634 EDSRQYSPGVLTDLRSALVNN 1654
>Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical
protein F26E4.10 protein.
Length = 1086
Score = 39.5 bits (88), Expect = 0.013
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 885 ERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSN 925
+RLE +GDS L+ ++ +LY P HEG +S +R+ VSN
Sbjct: 870 QRLEWLGDSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSN 910
Score = 35.1 bits (77), Expect = 0.28
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 885 ERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLNLYRLGRN 934
ERLE +GD+ ++ ++ +LY + EG L+ R+ V N NL L +N
Sbjct: 691 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKN 740
>AF160248-1|AAD45518.1| 860|Caenorhabditis elegans ribonuclease
protein.
Length = 860
Score = 39.5 bits (88), Expect = 0.013
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 885 ERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSN 925
+RLE +GDS L+ ++ +LY P HEG +S +R+ VSN
Sbjct: 644 QRLEWLGDSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSN 684
Score = 35.1 bits (77), Expect = 0.28
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 885 ERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLNLYRLGRN 934
ERLE +GD+ ++ ++ +LY + EG L+ R+ V N NL L +N
Sbjct: 465 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKN 514
>Z73906-6|CAA98113.1| 824|Caenorhabditis elegans Hypothetical
protein D2030.6 protein.
Length = 824
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 329 WRLSPDSVFPSASHA-TFRDYYQNKYGVTITQSKQPLL 365
+ +SP S F + T ++Y++N+YG+ IT QP++
Sbjct: 267 YSISPLSEFVKDGQSITLKEYFKNQYGIEITVDDQPII 304
>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical protein
T01E8.3 protein.
Length = 1299
Score = 30.3 bits (65), Expect = 8.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 912 EGKLSHMRSKQVSNLNLYRLGRNKQLGSRMIASKFEPHDNWLPPCH 957
EGKL + K + N +L R GSR+ ++ + P W CH
Sbjct: 961 EGKLDKLVEKGLLPFNSRKLSRVYPNGSRITSNNYSPVPMWNAGCH 1006
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.134 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,767,290
Number of Sequences: 27539
Number of extensions: 1065358
Number of successful extensions: 2562
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2546
Number of HSP's gapped (non-prelim): 16
length of query: 1126
length of database: 12,573,161
effective HSP length: 89
effective length of query: 1037
effective length of database: 10,122,190
effective search space: 10496711030
effective search space used: 10496711030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)
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