GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001833-TA|BGIBMGA001833-PA|IPR003100|Argonaute and Dicer
protein, PAZ, IPR000999|Ribonuclease III
         (1126 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   1.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   2.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   3.5  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    25   4.6  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    25   4.6  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    25   4.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 528 TINDILQEKEDAENGFEIGTWSNEMASSI 556
           ++ND+    E++  G E+G W N+ A++I
Sbjct: 49  SLNDLFSGPEESSGGVELG-WFNDSAAAI 76


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 791 KPEEIKSLFCFSMKDIDIDAPDYVDEKITNIGFD 824
           K  E  S+    +K  +I  PD V   +T++G D
Sbjct: 98  KSSEFDSINSIRVKSYEIWVPDIVMHSVTSVGID 131


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)

Query: 558 EDTDFDEYLEPLPPNLTF 575
           +  DFDE+L P PPNL +
Sbjct: 312 DHVDFDEFLPP-PPNLDY 328


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 1040 LAALPHTHSTSEQRETSAEPPPARRRVGSLPPYRDRQGNWVQQVYGELKAPPSPLLRYVE 1099
            LA L  T   +    T+ +PP    R+          GN  + VY     PP P LR   
Sbjct: 5    LAILVVTFVVAVFGNTNLDPPTRPTRLRREAKPEAEPGN-NRPVYIPQPRPPHPRLRREA 63

Query: 1100 DPEGE 1104
            +PE E
Sbjct: 64   EPEAE 68


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 1040 LAALPHTHSTSEQRETSAEPPPARRRVGSLPPYRDRQGNWVQQVYGELKAPPSPLLRYVE 1099
            LA L  T   +    T+ +PP    R+          GN  + VY     PP P LR   
Sbjct: 6    LAILVVTFVVAVFGNTNLDPPTRPTRLRREAEPEAEPGN-NRPVYIPQPRPPHPRLRREA 64

Query: 1100 DPEGE 1104
            +PE E
Sbjct: 65   EPEAE 69


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 773 QSVERNKRFILNHLKTNLKPEEIKSLFCFSMKDIDI 808
           Q++E  K F  NH  T  +  EI    C + + I I
Sbjct: 19  QTLELEKEFHYNHYLTRRRRIEIAHALCLTERQIKI 54


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 309,437
Number of Sequences: 429
Number of extensions: 13055
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 12
length of query: 1126
length of database: 140,377
effective HSP length: 65
effective length of query: 1061
effective length of database: 112,492
effective search space: 119354012
effective search space used: 119354012
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)