Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001832-TA|BGIBMGA001832-PA|IPR001650|Helicase,
C-terminal, IPR005034|Protein of unknown function DUF283
         (1139 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       30   0.12 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.38 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   1.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   4.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   4.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   6.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 708 RQNKKHEDVLKKFRMHECNLLLATAALEEGIDLPRCNLVLRWD 750
           R  ++ E+ L  F+    ++L+ATA    G+D+   + V+ +D
Sbjct: 485 RLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYD 527



 Score = 25.8 bits (54), Expect = 2.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 288 MKRTVEDVAEFVNDHRHDPTEIYGDELYEE 317
           MK+  + +A F++++ +  T I+GD L  +
Sbjct: 460 MKKKADFIAVFLSENNYPTTSIHGDRLQRQ 489



 Score = 24.2 bits (50), Expect = 6.1
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 127 FGSHKKFEDIHNDKQADNSEDSNKRDSCNLKDMLIEEDKHDNERSEKDMRHSQTDSPNE 185
           F +  K  D +ND + ++  + + R+    K     ED  + E  +   ++   + PN+
Sbjct: 103 FNNKNKDGDDNNDYEDNDYGNQDNRNDRRKKTFAAREDNDEEEAQKPKEQYIPPELPND 161


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 28.3 bits (60), Expect = 0.38
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 837 KDSKKETKLSEN--YVTVSDVSDVNELNDKRNVKEKDDKKIEWTKTEDVDVISNKSESDL 894
           K+ K    +S N   + V   ++VN+     + KE   KK   T T    VIS++ E   
Sbjct: 754 KNKKNVGSMSRNKALLPVIKPANVNKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKK 813

Query: 895 CQTCNDSDPC 904
            +  N +D C
Sbjct: 814 SEEKNINDHC 823


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 472 TDSGHVILESGNTDKENFASLNNAVNVVADLCGSTENVKNGDNGGRLNNTSPNETDNTQV 531
           +DS  + L+S N    NF    N  N      GSTE   +  N  +     P  + N Q 
Sbjct: 352 SDSCCLCLDSMNAVIRNFNESENRRN---SCLGSTETYYSKHNTQQFTQYIPESSSNLQE 408

Query: 532 KTEPD 536
           KT+ D
Sbjct: 409 KTKID 413


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 184 NEITCDSDIGSLK-DTKT-DLEQDIVAEDKSLESENIDDFDMYEKLEW---KIEQLENE- 237
           +E TC    GS   D  T DL      ED +     ID  D Y  +EW   K+  + NE 
Sbjct: 155 DEQTCFMKFGSWTYDGYTVDLRHLAQTEDSNQIEVGIDLTDYYISVEWDIIKVPAVRNEA 214

Query: 238 --LCCK 241
             +CC+
Sbjct: 215 FYICCE 220


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 504 GSTENVKNGDNGGRLNNTSPNETDNTQVKTEPDEEKIKSKTLELLS 549
           GS EN+ +G N    N TS    +NT   T  +  K  + T  LL+
Sbjct: 604 GSAENLSSGSN----NQTSSASRENTSNTTSMESFKPPTLTESLLN 645


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 14/55 (25%), Positives = 22/55 (40%)

Query: 474 SGHVILESGNTDKENFASLNNAVNVVADLCGSTENVKNGDNGGRLNNTSPNETDN 528
           +G V+LE+   +  N        N  A    +  N  N +N G  +N + N   N
Sbjct: 211 AGAVVLETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASN 265


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 332,394
Number of Sequences: 429
Number of extensions: 15384
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 9
length of query: 1139
length of database: 140,377
effective HSP length: 65
effective length of query: 1074
effective length of database: 112,492
effective search space: 120816408
effective search space used: 120816408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)