GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001831-TA|BGIBMGA001831-PA|IPR001660|Sterile alpha motif
SAM, IPR010993|Sterile alpha motif homology
         (142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    37   0.001
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    36   0.002
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    30   0.16 
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   0.84 
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   1.9  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   2.6  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   3.4  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    25   3.4  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   3.4  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.9  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    24   7.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   7.8  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    24   7.8  

>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 76  FKWTEEEVASWAEDIGFPQYKECFTDNNING--LRLLMFEDPSNLPCIGIHDFIDIL 130
           + W  E V +W E +GFP +KE F D +I G  + LL   D  ++    +   IDIL
Sbjct: 9   WNWNNEAVCNWIEQLGFP-HKEAFEDYHILGKDIDLLSSNDLRDMGIESVGHRIDIL 64


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 78  WTEEEVASWAEDIGFPQYKECFTDNNINGLRL 109
           +T +EVA W + IG  +Y E F+ NNI G  L
Sbjct: 4   YTSKEVAEWLKSIGLEKYIEQFSQNNIEGRHL 35


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 45  KNKKLKPCQISPLTLYELAANVVDALSFPIAFK-------WTEEEVASWAEDIGFP 93
           K KK    ++SP +L E AA   DAL+  +          W++ E+ +W  D+G P
Sbjct: 150 KEKKGILEKLSPASLRETAAKEYDALTSKLGNTGDWIYDTWSDNELRTWLHDVGVP 205


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 78  WTEEEVASWAEDIGFPQYKECFTDNNINGLRLLMFEDPSNLPCIGIHDF 126
           W+ EEV  W  + G       F +N I G  +L+  D + L  + I  F
Sbjct: 250 WSTEEVVEWLMNAGLGSVAPNFAENEITG-EILLGLDSNVLKELNITSF 297


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 16 VPARIPNFPSPDKSTCAECSCYPIEE 41
          +PAR  + P+P+ ST  + S +P EE
Sbjct: 57 LPARPFSLPNPNNSTVEKQSLFPFEE 82


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 62  LAANVVDALSFPIAFKWTEEEVASW 86
           LAA   D L+ P++  W E+++  W
Sbjct: 480 LAAGCNDFLTKPVSLVWLEKKITEW 504


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 24  PSPDKSTCAECSCYPIEEPYQKNKKLKPCQISPLTLYELAANVVDALSFPIAFKWTEEEV 83
           P P ++   E +C P    Y  N ++K  ++  L L +   +V+   SF      + E V
Sbjct: 28  PKPSENDPKEPTCSPSPAFYSVNGEMKDYKLMALELED--KSVLQGYSFGADHSVSGELV 85

Query: 84  ASWAEDIGFPQYKECFTDNNINGLRLLMFEDPS 116
                  G   Y E  TD +  G ++L+F  P+
Sbjct: 86  F----QTGMVGYPESLTDPSYRG-QILVFTFPT 113


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 12  PSLIVPARIPNFPSP 26
           P ++VP++ PN PSP
Sbjct: 231 PEVVVPSKQPNLPSP 245


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)

Query: 5   TIIPRRVPSLIVPARIPNFPSP 26
           TI P  VP++I PA +P+ P+P
Sbjct: 550 TIAPSPVPTIIAPA-LPSTPAP 570


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 111 MFEDPSNLPCIGIHDFIDILIRRP--PLDED 139
           M ED  N PC  I +F+ +L+  P  PL +D
Sbjct: 727 MNED-KNKPCKKIREFVQLLLENPNYPLPKD 756


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 26  PDKSTCAECSCYPIEEPYQKNKKLKPCQI 54
           P K TC+ CS       Y  +K ++ C +
Sbjct: 146 PVKRTCSVCSGQGFNPKYSADKAIESCPV 174


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)

Query: 8   PRRVPSLIVPARIPNFPSPDKST 30
           P RVPSL  PA  P  P P   T
Sbjct: 242 PERVPSLSAPAP-PPIPPPSNGT 263


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 76  FKWTEEEVASWAEDI--GFPQYKECFT 100
           F+W  +E A WA  I   +P+Y   FT
Sbjct: 178 FEWDRKEFAKWAYKICKRYPEYTVEFT 204


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.140    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 786,471
Number of Sequences: 5004
Number of extensions: 34121
Number of successful extensions: 83
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 14
length of query: 142
length of database: 2,362,478
effective HSP length: 66
effective length of query: 76
effective length of database: 2,032,214
effective search space: 154448264
effective search space used: 154448264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)