Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001831-TA|BGIBMGA001831-PA|IPR001660|Sterile alpha motif
SAM, IPR010993|Sterile alpha motif homology
(142 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 38 0.004
05_05_0317 + 24039343-24042717 29 1.1
06_03_0391 - 20287755-20288084,20288174-20288414,20288519-202888... 29 1.4
01_01_0104 + 780442-781273,782514-783424 29 1.4
10_08_0008 - 14046647-14047462,14050744-14051499 28 2.5
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897... 28 2.5
05_07_0010 - 27024013-27024171,27024286-27024699,27025389-270254... 28 3.3
09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616 27 4.4
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 27 5.8
09_06_0327 + 22359524-22359602,22359732-22359835,22362073-223622... 27 7.6
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 37.5 bits (83), Expect = 0.004
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 76 FKWTEEEVASWAEDIGFPQYKECFTDNNING 106
F WT E+V W E+I Y++ F +N +NG
Sbjct: 49 FIWTVEDVGLWLEEINLGSYRQVFEENGVNG 79
>05_05_0317 + 24039343-24042717
Length = 1124
Score = 29.5 bits (63), Expect = 1.1
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 52 CQISPLTLYELAA-NVVDALSFPIAFKWTEEEVASWAEDIGFPQYKECFTDNNINGLRLL 110
C I P L EL +D FP + +E S E GFP KE ++ +N R +
Sbjct: 789 CSILP-ALGELPLLKFLDIGGFPAIIQINQEFSGS-DEVKGFPSLKELVIEDMVNLQRWV 846
Query: 111 MFEDPSNLPCIGIHDFIDI--LIRRPPL 136
F+D LP + + ID + PPL
Sbjct: 847 SFQDGELLPSLTELEVIDCPQVTEFPPL 874
>06_03_0391 -
20287755-20288084,20288174-20288414,20288519-20288844,
20288954-20289097,20289260-20289380,20289645-20289733,
20289821-20289891,20290165-20290309,20290390-20290479,
20290991-20291239
Length = 601
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 11 VPSLIVPARIPNFPSPDKSTCAECSCYPIEEPYQKNKKLKPC 52
V L++ + P+ P ++S EEPY++ +K KPC
Sbjct: 111 VTKLLLMSNFPSLPVQNESDSDSVKFSLWEEPYKQARKWKPC 152
>01_01_0104 + 780442-781273,782514-783424
Length = 580
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 12 PSLIVPARIP--NFPSPDKSTCAECSCYPIEEPYQKNKKLKPCQISPLTLYELAANVVDA 69
P + P R+ N S +++CA +C ++ + L PC+++ + E N++
Sbjct: 49 PEIRFPHRLESSNTSSACRASCARLACSG-QDTILHHPILGPCKVTSIDYKEAVINIIHL 107
Query: 70 LSFP 73
L FP
Sbjct: 108 LPFP 111
>10_08_0008 - 14046647-14047462,14050744-14051499
Length = 523
Score = 28.3 bits (60), Expect = 2.5
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 5 TIIPRRVPSLIVPARIPNFPSPDKSTCAECSCYPIEEPYQKNKKLKPCQISP--LTLYEL 62
T++ +RV V A +P+F C + + +K+ KL P + P +TLY
Sbjct: 377 TVVLKRVFRADVKAYLPDFKLALDHFCIHAGGRGVLDELEKSLKLSPWDMEPSRMTLYRF 436
Query: 63 AANVVDALSFPIAF 76
+L + +A+
Sbjct: 437 GNTSSSSLWYELAY 450
>03_05_0172 -
21488504-21488752,21488862-21489611,21489691-21489789,
21489862-21490776,21490847-21490976,21491438-21491583,
21491801-21491896,21492521-21492613,21492702-21492755,
21492897-21492956,21493046-21493171,21493283-21493366,
21493444-21493587,21493667-21493963
Length = 1080
Score = 28.3 bits (60), Expect = 2.5
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 4 RTIIPRRVPSLIVPARIPNFPSPDKSTCAECSCYPIE-EPYQKNKKLKPCQISPLTLYEL 62
R ++PR +L + SP+K T +C C +E Q N L P Q + L + E
Sbjct: 201 RGVVPRVFQNLFAQIQGRQESSPEKQTSYQCRCSFLEVHNEQINDLLDPSQRN-LQIREN 259
Query: 63 AANVVDALSFPIAFKWTEEEV 83
A N + + + T E+V
Sbjct: 260 AGNGIHVENLTDEYVSTVEDV 280
>05_07_0010 -
27024013-27024171,27024286-27024699,27025389-27025445,
27025544-27025637,27025775-27025868,27025949-27026117,
27026450-27026554,27026665-27026784,27027190-27027735
Length = 585
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 58 TLYELAANVVDALSFPIAFKWTEEEVASWAED 89
T +++A DAL+ P F W ++ VA W ++
Sbjct: 123 TFRKVSAGTRDALTLPRFFDWGDDLVAFWQDE 154
>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
Length = 695
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 8 PRRVPSLIVPARIPNFPSPDKSTCAECSCYPIEEP 42
P P L +PA P F + + S CA S + P
Sbjct: 168 PADQPGLFMPASTPRFSTVEASYCASTSMHQAPHP 202
>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 20 IPNFPSPDKSTCAECSCYPIEEPYQKNKKLKPCQISPLTLYEL 62
+P P P+ YP+ E QK + C++ TLYEL
Sbjct: 1427 VPIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQQTLYEL 1469
>09_06_0327 +
22359524-22359602,22359732-22359835,22362073-22362272,
22362359-22362459,22362551-22363005,22363079-22363645
Length = 501
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 92 FPQYKECFTDNNINGLRLLMFEDPSN 117
F +K CF D N+ LRL M PS+
Sbjct: 442 FALFKACFDDLNMEKLRLSMATPPSS 467
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.140 0.451
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,971,285
Number of Sequences: 37544
Number of extensions: 207327
Number of successful extensions: 358
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 11
length of query: 142
length of database: 14,793,348
effective HSP length: 75
effective length of query: 67
effective length of database: 11,977,548
effective search space: 802495716
effective search space used: 802495716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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