GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001831-TA|BGIBMGA001831-PA|IPR001660|Sterile alpha motif
SAM, IPR010993|Sterile alpha motif homology
         (142 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.23 
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   3.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   5.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 0.23
 Identities = 13/36 (36%), Positives = 15/36 (41%)

Query: 33  ECSCYPIEEPYQKNKKLKPCQISPLTLYELAANVVD 68
           EC C P     +K+ K  PC   P     L  N VD
Sbjct: 295 ECRCDPGYFRAEKDPKKMPCTQPPSAPQNLTVNFVD 330


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 28  KSTCAECSCYPIEEPYQKNKKLKPC 52
           K   ++CS    E P+ K  KL  C
Sbjct: 98  KQLVSDCSTISEENPHLKASKLVQC 122


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 80  EEEVASWAEDIG 91
           E  VA W EDIG
Sbjct: 193 EHRVAYWREDIG 204


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 111 MFEDPSNLPCIGIHDFIDILIRRPP 135
           +FE+PS +  I   +F+  ++R  P
Sbjct: 18  IFEEPSVMLKIWTEEFLSTILRLDP 42


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.140    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,613
Number of Sequences: 429
Number of extensions: 2357
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 142
length of database: 140,377
effective HSP length: 52
effective length of query: 90
effective length of database: 118,069
effective search space: 10626210
effective search space used: 10626210
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)