GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001831-TA|BGIBMGA001831-PA|IPR001660|Sterile alpha motif
SAM, IPR010993|Sterile alpha motif homology
         (142 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07760.2 68416.m00944 expressed protein                             39   0.001
At3g07760.1 68416.m00943 expressed protein                             39   0.001
At1g29750.2 68414.m03638 leucine-rich repeat transmembrane prote...    28   2.8  
At1g29750.1 68414.m03637 leucine-rich repeat transmembrane prote...    28   2.8  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    27   4.9  
At2g26640.1 68415.m03196 beta-ketoacyl-CoA synthase, putative si...    27   4.9  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    27   6.4  
At4g35300.2 68417.m05018 transporter-related low similarity to h...    26   8.5  
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ...    26   8.5  
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    26   8.5  

>At3g07760.2 68416.m00944 expressed protein
          Length = 125

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 76  FKWTEEEVASWAEDIGFPQYKECFTDNNING 106
           F WT E+V SW E+I    Y++ F +N +NG
Sbjct: 13  FIWTVEDVGSWLEEINLGGYRQIFKENGVNG 43


>At3g07760.1 68416.m00943 expressed protein
          Length = 125

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 76  FKWTEEEVASWAEDIGFPQYKECFTDNNING 106
           F WT E+V SW E+I    Y++ F +N +NG
Sbjct: 13  FIWTVEDVGSWLEEINLGGYRQIFKENGVNG 43


>At1g29750.2 68414.m03638 leucine-rich repeat transmembrane protein
           kinase, putative / serine/threonine kinase, putative
           (RKF1) similar to receptor-like serine/threonine kinase
           GI:2465923 from [Arabidopsis thaliana]; identical to
           cDNA receptor-like serine/threonine kinase (RKF1)
           GI:2465922
          Length = 1021

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 17/98 (17%)

Query: 20  IPNFPSPDKSTCAECSCYPIEEPYQKNKKLKPCQISPLTLYELAANVVDALSFPIAFKWT 79
           I +F  P  S+C   +C    + Y K KK K        LYE   NV        A K+ 
Sbjct: 406 IKDFKCPRYSSCLHVNCGG-SDMYVKEKKTKE-------LYEGDGNVEGG-----AAKYF 452

Query: 80  EEEVASWAEDIGFPQYKECFTDNNINGLRLLMFEDPSN 117
            +  A+W    GF    +   DNN    R  MF   SN
Sbjct: 453 LKPDANW----GFSSTGDFMDDNNFQNTRFTMFVPASN 486


>At1g29750.1 68414.m03637 leucine-rich repeat transmembrane protein
           kinase, putative / serine/threonine kinase, putative
           (RKF1) similar to receptor-like serine/threonine kinase
           GI:2465923 from [Arabidopsis thaliana]; identical to
           cDNA receptor-like serine/threonine kinase (RKF1)
           GI:2465922
          Length = 1006

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 17/98 (17%)

Query: 20  IPNFPSPDKSTCAECSCYPIEEPYQKNKKLKPCQISPLTLYELAANVVDALSFPIAFKWT 79
           I +F  P  S+C   +C    + Y K KK K        LYE   NV        A K+ 
Sbjct: 391 IKDFKCPRYSSCLHVNCGG-SDMYVKEKKTKE-------LYEGDGNVEGG-----AAKYF 437

Query: 80  EEEVASWAEDIGFPQYKECFTDNNINGLRLLMFEDPSN 117
            +  A+W    GF    +   DNN    R  MF   SN
Sbjct: 438 LKPDANW----GFSSTGDFMDDNNFQNTRFTMFVPASN 471


>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
            trafficking regulator - Bos taurus, EMBL: AF114785
          Length = 3471

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 38   PIEEPYQKNKKLKPCQISPLTLYEL 62
            PIE PY+  KKL+ C++   +L+ L
Sbjct: 2541 PIEGPYRMRKKLERCKLKIDSLHNL 2565


>At2g26640.1 68415.m03196 beta-ketoacyl-CoA synthase, putative
           similar to beta-ketoacyl-CoA synthase [Simmondsia
           chinensis][GI:1045614]
          Length = 509

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 5   TIIPRRVPSLIVPARIPNFPSPDKSTCAECSCYPIEEPYQKNKKLKPCQISP--LTLYEL 62
           T++ R++  + +   IP+F    +  C       + +  +KN KL    + P  +TLY  
Sbjct: 375 TLVGRKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLKLTEWHMEPSRMTLYRF 434

Query: 63  AANVVDALSFPIAF 76
                 +L + +A+
Sbjct: 435 GNTSSSSLWYELAY 448


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
            protein [Arabidopsis thaliana] GI:21743571; contains Pfam
            profile PF00730: HhH-GPD superfamily base excision DNA
            repair protein
          Length = 1729

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 20   IPNFPSPDKSTCAECSCYPIEEPYQKNKKLKPCQISPLTLYEL 62
            +P  P P+         YP+ E  QK    + C++   TLYEL
Sbjct: 1317 VPLQPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYEL 1359


>At4g35300.2 68417.m05018 transporter-related low similarity to
           hexose transporter [Solanum tuberosum] GI:8347246;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 729

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 74  IAFKWTEEEVASWAEDIGFP 93
           +A+KWTE E  S  ++ GFP
Sbjct: 417 VAWKWTEREDESGQKEEGFP 436


>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
           nearly identical to SCARECROW [Arabidopsis thaliana]
           GI:1497987
          Length = 653

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 5   TIIPRRVPSLIVPARIPNFPSPDKSTC 31
           T+ P++ PSL   A + + P+P  S C
Sbjct: 78  TVTPQQPPSLTAAATVSSQPNPPLSVC 104


>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
            protein (ROS1) similar to DEMETER protein [Arabidopsis
            thaliana] GI:21743571; contains Pfam profile PF00730:
            HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 20   IPNFPSPDKSTCAECSCYPIEEPYQKNKKLKPCQISPLTLYEL 62
            +P  P P+         YP+ E  QK    + C++   TLYEL
Sbjct: 984  VPLQPLPESLQLHLLEMYPMLESIQKYLWPRLCKLDQKTLYEL 1026


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.140    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,037,476
Number of Sequences: 28952
Number of extensions: 172765
Number of successful extensions: 292
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 11
length of query: 142
length of database: 12,070,560
effective HSP length: 74
effective length of query: 68
effective length of database: 9,928,112
effective search space: 675111616
effective search space used: 675111616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)