Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001830-TA|BGIBMGA001830-PA|IPR006055|Exonuclease,
IPR013520|Exonuclease, RNase T and DNA polymerase III,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    83   2e-17
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    36   0.003
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    32   0.058
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   5.0  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   8.8  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   8.8  

>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 83.0 bits (196), Expect = 2e-17
 Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 6/162 (3%)

Query: 5   VSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQDL 64
           +++DC+ +GV     +    A V+IVN     VY+  + P+  +++D+RT   G+++  +
Sbjct: 94  IAMDCEMVGVADDMSVL---ARVSIVNYHGHVVYDTYVRPKE-KVTDWRTWVSGVKSFHM 149

Query: 65  SRGLHIKVVRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYKK-YN 123
                 + V+  V++IL N +LVG+ V   L++L L HP   IRD S +  Y +  K   
Sbjct: 150 RDAPSFEKVQAEVAKILDNRVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRT 209

Query: 124 PTLRQLTRSYLSRGLEA-PRTAVKDATAAMDLYLKVAEFWEE 164
           P L++L    L R +++   ++V+DA A M+LY KV +  +E
Sbjct: 210 PGLKKLAEVILGRDIQSGQHSSVQDAQATMELYKKVKKEMDE 251


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 13/118 (11%)

Query: 48   QISDYRTRFHGIQAQDLSRG------LHIKVVRQAVSRILKN--CLLVGYDVSRSLRLLG 99
            +++DY T + GI   DL         + +KV  + + R+L N  C+ VG+ + +  R++ 
Sbjct: 946  KVTDYLTEYSGIHPGDLDPDRSPYNVVPLKVAYKKL-RLLVNAGCIFVGHGLQKDFRIIN 1004

Query: 100  LGHPEDNIRD-VSTYHLYTRYKKYNPTLRQLTRSYLSRGLE-APRTAVKDATAAMDLY 155
            L  P + + D V  + L +R +K   +L+ L    L   ++     +++DA  A+ LY
Sbjct: 1005 LLVPPEQVVDTVDLFFLSSRQRKL--SLKFLAWYLLDEEIQLTEHDSIEDALTALKLY 1060


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 31.9 bits (69), Expect = 0.058
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 70   IKVVRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYKKYNPTLRQL 129
            ++V+ Q ++RI  +   V   V + L  +G  HP+  +     Y L    K  NP  +  
Sbjct: 1735 LEVIPQLIARIHTSSSSVRASVHQLLSDIGRVHPQALV-----YSLTVSSKSTNPQQKHS 1789

Query: 130  TRSYLSRGLEAPRTAVKDATAAMDLYLKVAEFWEE 164
             +S +   L    T V+ A       ++VA  W E
Sbjct: 1790 AKSIMDSMLSHSDTLVRQALLVSQELIRVAILWHE 1824


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 103 PEDN-IRDVSTYHL--YTRYKKYNPTLRQLTRSYLSRGLEAPRTAVKDATA 150
           PE+N +R  +T  L  YT +   +    +L  +Y+S G E     V+ A A
Sbjct: 482 PENNKVRYAATLFLGRYTEWTAQHSEFLELQLNYISAGFEVANKEVQSAAA 532


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 122 YNPTLRQLTRSYLSRGLEAPRTAVKDAT 149
           YN +  QL+R  L   LE+P T ++  T
Sbjct: 696 YNESFSQLSRESLFTSLESPFTDIESPT 723


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 151 AMDLYLKVAEFWEEEL--LNETDSSECDEDSYY 181
           A+D+YLK+   WE  L   N   S + + + YY
Sbjct: 735 ALDVYLKILNDWEGALSYCNSVYSIDGETEPYY 767


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 815,135
Number of Sequences: 5004
Number of extensions: 30909
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 6
length of query: 183
length of database: 2,362,478
effective HSP length: 69
effective length of query: 114
effective length of database: 2,017,202
effective search space: 229961028
effective search space used: 229961028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)