Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001830-TA|BGIBMGA001830-PA|IPR006055|Exonuclease,
IPR013520|Exonuclease, RNase T and DNA polymerase III,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (183 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31090| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   9e-15
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)              35   0.035
SB_45741| Best HMM Match : DSPc (HMM E-Value=1.2e-05)                  31   0.56 
SB_24190| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_5278| Best HMM Match : CbiC (HMM E-Value=6.7)                       28   5.3  
SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_31090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 77.0 bits (181), Expect = 9e-15
 Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 2/109 (1%)

Query: 5   VSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQDL 64
           ++IDC+ +GV  SEG ++  A V+IVN     VY+  + P   ++ DYRT   GI++ DL
Sbjct: 122 IAIDCEFVGV-GSEGAKHMLARVSIVNSHGRVVYDKYVAPEE-RVIDYRTAVSGIRSLDL 179

Query: 65  SRGLHIKVVRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTY 113
                 K V++ VS IL+  +++G+ +   L++L L HP  +IRD S Y
Sbjct: 180 KDAPDFKTVQKEVSDILQGRIVIGHALKHDLQVLFLAHPRKDIRDTSKY 228


>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
          Length = 1597

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 12/119 (10%)

Query: 48  QISDYRTRFHGIQAQDLSRGL---HIKVVRQAVSRIL----KNCLLVGYDVSRSLRLLGL 100
           Q+ DY T+F GI+  DL   +   H+  ++    +I     +    VG+ + +  R++ +
Sbjct: 420 QVVDYLTKFSGIKPGDLDATMSSKHLTTLKTTYLKIRALVDRKVKFVGHGLKKDFRVINI 479

Query: 101 GHPEDNIRD-VSTYHLYTRYKKYNPTLRQLTRSYLSRGLEA-PRTAVKDATAAMDLYLK 157
             P+  + D V  +HL    ++Y  +LR L   +L   +++    + +DA  A++LY K
Sbjct: 480 LVPKGQVFDTVGLFHL--PRQRY-LSLRFLAWYFLGLNIQSETHDSTEDACTALELYRK 535


>SB_45741| Best HMM Match : DSPc (HMM E-Value=1.2e-05)
          Length = 246

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 17/81 (20%), Positives = 36/81 (44%)

Query: 33  DKICVYNAVINPRNLQISDYRTRFHGIQAQDLSRGLHIKVVRQAVSRILKNCLLVGYDVS 92
           D +  Y   + P  L I  Y+   +    +DL    H+ V  +A   +  + +++G D  
Sbjct: 113 DTLITYPVEVLPSFLYIGTYKQSQNKAITKDLKVKAHVNVTMEADKELSADSIILGVDDK 172

Query: 93  RSLRLLGLGHPEDNIRDVSTY 113
              ++L +   ++N  D+ T+
Sbjct: 173 HVSQVLTIAVEDENKADLLTH 193


>SB_24190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 165 ELLNETDSSECDEDSYYTD 183
           E++NETD SEC ++ + TD
Sbjct: 12  EIVNETDPSECKKNCFLTD 30


>SB_5278| Best HMM Match : CbiC (HMM E-Value=6.7)
          Length = 206

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 73  VRQAVSRILK-NCLLVGYDVSRSLRLLGLGHPEDNIRDVS 111
           +R  V  I+K NCLL    ++R LR   L  PE + R V+
Sbjct: 68  MRDCVREIIKENCLLTLQQINRQLRARPLAKPEVHDRTVA 107


>SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 117 TRYKKYNPTLRQLTRSYLSRGLEAPRTAVKD 147
           T    ++P  RQ+TRS++  GL+ PR   +D
Sbjct: 132 TNEGNWSPNARQITRSWIQEGLK-PRCITRD 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,868,744
Number of Sequences: 59808
Number of extensions: 219907
Number of successful extensions: 436
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 6
length of query: 183
length of database: 16,821,457
effective HSP length: 78
effective length of query: 105
effective length of database: 12,156,433
effective search space: 1276425465
effective search space used: 1276425465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)