Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001830-TA|BGIBMGA001830-PA|IPR006055|Exonuclease,
IPR013520|Exonuclease, RNase T and DNA polymerase III,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(183 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023828-14|CAA19458.1| 269|Caenorhabditis elegans Hypothetical... 70 1e-12
AL132860-30|CAB60505.2| 386|Caenorhabditis elegans Hypothetical... 33 0.16
Z81562-5|CAB04555.1| 408|Caenorhabditis elegans Hypothetical pr... 28 3.5
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z68337-4|CAA92744.1| 364|Caenorhabditis elegans Hypothetical pr... 27 8.0
U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical pr... 27 8.0
U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical pr... 27 8.0
>AL023828-14|CAA19458.1| 269|Caenorhabditis elegans Hypothetical
protein Y17G7B.12 protein.
Length = 269
Score = 69.7 bits (163), Expect = 1e-12
Identities = 44/171 (25%), Positives = 87/171 (50%), Gaps = 9/171 (5%)
Query: 1 MADAVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQ 60
+ ++IDC+ +G G + A ++IVNE VY+ + P +++D+RT GI+
Sbjct: 99 LTKVIAIDCEYVGAGMG-GTTDILARISIVNELGKIVYDKFVKPTE-KVTDFRTAVSGIR 156
Query: 61 AQDLSRGLHIKVVRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYK 120
+++ + + + VS+++ +++G+ V R+L L H RD + +
Sbjct: 157 PENMIKAIPFDRAQTEVSKLIDGRIVIGHAVHNDFRVLKLNHIRKLTRDTAKCTILKNMA 216
Query: 121 KYN--PTLRQLTRSYLSRGLEAPR---TAVKDATAAMDLYLKVAEFWEEEL 166
++ P+L++L + L G+E R ++ DA A+ LY V + WE E+
Sbjct: 217 NHHGTPSLKKLAKEVL--GIEIQRGEHDSITDARVALRLYEAVKKQWEAEI 265
>AL132860-30|CAB60505.2| 386|Caenorhabditis elegans Hypothetical
protein Y56A3A.28 protein.
Length = 386
Score = 32.7 bits (71), Expect = 0.16
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 74 RQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYKKYNPTLRQLTRSY 133
R V+ ++N ++ G + RS R + HPED + + T YT +K ++R +
Sbjct: 282 RHIVNHHIRNAVIKGPIMRRS-RTIPRYHPEDQVESIPTTMKYTVNEK---SVRVSVAAT 337
Query: 134 LSRGLEAPRTAVKDATAAMDLYLKVAEFWEEELLNETDSSECDED 178
R L T + A A+ V E EEE++ E + D++
Sbjct: 338 RRRQLREDHTYISAAAASTSNEPYVEE--EEEIIEEAPIGDEDDE 380
>Z81562-5|CAB04555.1| 408|Caenorhabditis elegans Hypothetical
protein K03D7.8 protein.
Length = 408
Score = 28.3 bits (60), Expect = 3.5
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 14 VESSEG-IRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQDLSRGLHIKV 72
VE +G + Y S+ + E + V N + N + + Y R Q +
Sbjct: 18 VELVQGKLEVYEISLLYIKEMALLVLNVLNNITFISLFIYNRRRKS-QPSSYRSEFDTLI 76
Query: 73 VRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRD 109
Q + C LV YD+S +LRL+G H ED + +
Sbjct: 77 FNQMY--YVSGCSLVFYDISFALRLVG-EHKEDTLSE 110
>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical protein
F31E3.4 protein.
Length = 1131
Score = 28.3 bits (60), Expect = 3.5
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 46 NLQISDYRTRFHGIQAQDLS-------RGLHIKVVRQAVSRILKNCLLVGYDVSRSLRLL 98
++++ DY T+F GI DL H +++ + I + VG+ + +L
Sbjct: 959 DVEVVDYLTKFSGIVKADLCPTTSEKYLTTHKRLLLRMHVLIQRGVTFVGHALHNDFTVL 1018
Query: 99 GLGHPEDNIRDVSTYHLYTRYKKYNPTLRQLTRSYLSRGLE-APRTAVKDATAAMDLYLK 157
+ E I D T L + +L+ L + L ++ +V DA A+ LY K
Sbjct: 1019 NVHVAESQIIDTVT--LMRLGTQRMLSLQFLVKEILGETIQMEAHDSVVDARYALKLYRK 1076
Query: 158 VAEFWEEELL 167
E E+ LL
Sbjct: 1077 YLEIKEQGLL 1086
>Z68337-4|CAA92744.1| 364|Caenorhabditis elegans Hypothetical
protein M7.7 protein.
Length = 364
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 39 NAVINPRNLQISDYRTRFHGIQAQDLSRGLHIKVVRQAVSRILKNCLLVGYDVSRSL 95
N NP NL + RFHG D R L ++ + +S + K+ L + V+ SL
Sbjct: 72 NTAFNPNNLPGASPFLRFHGYGGIDGFRWLAMERCGENLSDLRKDTPLGRFSVTTSL 128
>U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical
protein T05C1.4b protein.
Length = 1163
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 139 EAPRTAVKDATAAMDLYLKVAEFWEEELLNETDSSECDED 178
E P +++AT++ Y ++E +E +L S ECDED
Sbjct: 707 EKPDDLLREATSS---YSIMSEMYEGPMLQAGTSRECDED 743
>U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical
protein T05C1.4a protein.
Length = 1185
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 139 EAPRTAVKDATAAMDLYLKVAEFWEEELLNETDSSECDED 178
E P +++AT++ Y ++E +E +L S ECDED
Sbjct: 707 EKPDDLLREATSS---YSIMSEMYEGPMLQAGTSRECDED 743
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,259,303
Number of Sequences: 27539
Number of extensions: 156352
Number of successful extensions: 338
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 7
length of query: 183
length of database: 12,573,161
effective HSP length: 77
effective length of query: 106
effective length of database: 10,452,658
effective search space: 1107981748
effective search space used: 1107981748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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