Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001830-TA|BGIBMGA001830-PA|IPR006055|Exonuclease,
IPR013520|Exonuclease, RNase T and DNA polymerase III,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (183 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   4.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   5.4  

>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 108 RDVSTYHLYTRYKKYNPTLRQLTRSYLSRG 137
           R+  +Y     Y+KY  T ++ +R    RG
Sbjct: 278 REQKSYKNENSYRKYRETSKERSRDRRERG 307


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 73  VRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYT 117
           +    S+I +N L   +    +    GL   ++    +S YHLYT
Sbjct: 422 INAGFSKIAENLLEKNWLPVHTSYKSGLNLEQEKKDSISHYHLYT 466


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,204
Number of Sequences: 429
Number of extensions: 2101
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 183
length of database: 140,377
effective HSP length: 54
effective length of query: 129
effective length of database: 117,211
effective search space: 15120219
effective search space used: 15120219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)