GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001830-TA|BGIBMGA001830-PA|IPR006055|Exonuclease,
IPR013520|Exonuclease, RNase T and DNA polymerase III,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (183 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   2.6  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    21   6.0  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    21   6.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.9  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   7.9  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 40   AVINPRNLQISDYRTRFHGIQAQD 63
            + I  +NLQ+++     H I AQD
Sbjct: 1381 STIEEKNLQVNESGKLIHKIDAQD 1404


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 14/50 (28%), Positives = 20/50 (40%)

Query: 29  IVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQDLSRGLHIKVVRQAVS 78
           ++N     VYN  I     QI      F G     ++RGL + +    VS
Sbjct: 353 VLNSVSADVYNLEIQRFIHQIGTLEVAFTGKNFFSITRGLILSIAGAIVS 402


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 14/50 (28%), Positives = 20/50 (40%)

Query: 29  IVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQDLSRGLHIKVVRQAVS 78
           ++N     VYN  I     QI      F G     ++RGL + +    VS
Sbjct: 353 VLNSVSADVYNLEIQRFIHQIGTLEVAFTGKNFFSITRGLILSIAGAIVS 402


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 29  IVNEDKICVYNAVINP 44
           IV + ++C+ N VINP
Sbjct: 606 IVPKLQLCMQNLVINP 621


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory
          receptor candidate 42 protein.
          Length = 347

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 35 ICVYNAVINPRNLQISDYR 53
          +CV  A++ P  L I  YR
Sbjct: 33 LCVVTALVTPSALSIIYYR 51


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,646
Number of Sequences: 317
Number of extensions: 1555
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 183
length of database: 114,650
effective HSP length: 53
effective length of query: 130
effective length of database: 97,849
effective search space: 12720370
effective search space used: 12720370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)