Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001830-TA|BGIBMGA001830-PA|IPR006055|Exonuclease,
IPR013520|Exonuclease, RNase T and DNA polymerase III,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(183 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0490 - 17724878-17725045,17725264-17725342,17725434-177254... 76 2e-14
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447... 54 5e-08
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848... 43 2e-04
02_05_0476 + 29337124-29337158,29338460-29338669,29338760-293389... 37 0.011
06_03_0994 + 26691518-26691772,26692054-26692183,26692276-266923... 29 2.9
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 28 3.9
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 28 3.9
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 27 6.8
>08_02_0490 -
17724878-17725045,17725264-17725342,17725434-17725498,
17725569-17725657,17725750-17725858,17725969-17726047,
17727247-17727512
Length = 284
Score = 75.8 bits (178), Expect = 2e-14
Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 3/131 (2%)
Query: 37 VYNAVINPRNLQISDYRTRFHGIQAQDLSRGLHIKVVRQAVSRILKNCLLVGYDVSRSLR 96
VY+ P +I DYRT GI+ + +++ VV++ V+ ++K +LVG+ + L+
Sbjct: 123 VYDEYTRPVE-RIVDYRTHISGIRPKHMNKAKDFWVVQKDVAELIKGRILVGHALHHDLK 181
Query: 97 LLGLGHPEDNIRDVSTYHLYTRYKKYNPTLRQLTRSYLSRGL-EAPRTAVKDATAAMDLY 155
+L LGHP+ +IRD S Y ++ R K +L+ LT L + + ++DA AAM +Y
Sbjct: 182 VLLLGHPKKDIRDTSEYEVFRREGK-RRSLKDLTAQVLGAKIQQKEHCPIEDARAAMFIY 240
Query: 156 LKVAEFWEEEL 166
K + WE+ +
Sbjct: 241 NKHKKVWEKNM 251
>12_01_0552 +
4469009-4469080,4470052-4470117,4470808-4470941,
4471073-4471179,4471695-4471802,4471879-4471949,
4472126-4472185,4472264-4472319,4472663-4472723,
4472809-4473076,4473174-4473355,4473444-4473736,
4474048-4474138
Length = 522
Score = 54.4 bits (125), Expect = 5e-08
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 10/136 (7%)
Query: 27 VAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQ---DLSRGLHIKVVRQAVSRILKN 83
V +V+ V + ++ P N I+DY TRF GI A+ D++ L ++ + V + K
Sbjct: 198 VTLVDIKGEVVLDKLVKPAN-PITDYNTRFSGITAEMLADVTTTLQ-EIQEEFVGLVHKE 255
Query: 84 CLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYKKYNPTLRQLTRSYLSRGLE---A 140
+LVG+ + L L + H D I D + + + R ++ LR L + +L+R ++ +
Sbjct: 256 TVLVGHSLENDLMALRISH--DLIIDTAVLYKHNRGHRFKIALRVLAKKFLNREIQNTGS 313
Query: 141 PRTAVKDATAAMDLYL 156
+V+DA AA++L L
Sbjct: 314 GHDSVEDAKAALELAL 329
>04_04_1390 -
33184233-33184478,33184601-33184705,33184783-33184890,
33184967-33185101,33185263-33185363,33185495-33185564,
33185642-33185758,33186001-33186138,33186371-33186439,
33186556-33186645,33186758-33186940,33187020-33187052
Length = 464
Score = 42.7 bits (96), Expect = 2e-04
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 27 VAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQDLSRGLHIKVV--RQAVSRIL-KN 83
V +VN + + ++NP ++DYRT G+ +DL +G+ +V ++++ ++L K
Sbjct: 163 VCVVNSNLEVKLDELVNPLKA-VADYRTSITGLSKKDL-KGVTCSLVDVQKSLKKLLSKG 220
Query: 84 CLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYKKY-NPTLRQLTRSYLSRGLEA-- 140
+L+G+ +S+ L L + + D + Y + +L L +S L +
Sbjct: 221 KILIGHSLSKDLHALKFDY--SRVIDTAYIFKYANLPTTASASLNSLCKSVLGYAVREEG 278
Query: 141 -PRTAVKDATAAMDLYL 156
P +KDA AAM+L L
Sbjct: 279 EPHNCLKDAEAAMNLVL 295
>02_05_0476 +
29337124-29337158,29338460-29338669,29338760-29338936,
29338937-29339165
Length = 216
Score = 36.7 bits (81), Expect = 0.011
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 85 LLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYKKYNPTLRQLTRSYL 134
+LVG+ + L LGL +P IRD + Y + K + +L+ LT++YL
Sbjct: 59 ILVGHGLEHELERLGLEYPAFMIRDTAKYPPLMKTSKLSNSLKYLTQAYL 108
>06_03_0994 +
26691518-26691772,26692054-26692183,26692276-26692360,
26692740-26692986
Length = 238
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 149 TAAMDLYLKVAEFWE-EELLNETDSSECDED--SYYT 182
T+ MD+Y K E WE E +L + +SS+ D SY T
Sbjct: 156 TSLMDMYAKSNESWEAENILKQLESSQVKPDVASYNT 192
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 28.3 bits (60), Expect = 3.9
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 62 QDLSRGLHIKVVRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYKK 121
++LS L + + Q +CL + YD+ R+ L L +N+ D + +L ++
Sbjct: 1561 RELSEDLLVYFIEQGKKECFASCLFICYDLIRADVALELAW-MNNMVDFAFPYLLQFIRE 1619
Query: 122 YNPTLRQLTRSYL--SRGLEAPRTAVKDATAAMDLYLKV 158
Y + +L + + + A KD A ++Y ++
Sbjct: 1620 YTSKVDELVKDRIESQNEVRAKEKEEKDLVAQQNMYAQL 1658
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 28.3 bits (60), Expect = 3.9
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 62 QDLSRGLHIKVVRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYKK 121
++LS L + + Q +CL + YD+ R+ L L +N+ D + +L ++
Sbjct: 1561 RELSEDLLVYFIEQGKKECFASCLFICYDLIRADVALELAW-MNNMVDFAFPYLLQFIRE 1619
Query: 122 YNPTLRQLTRSYL--SRGLEAPRTAVKDATAAMDLYLKV 158
Y + +L + + + A KD A ++Y ++
Sbjct: 1620 YTSKVDELVKDRIESQNEVRAKEKEEKDLVAQQNMYAQL 1658
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 95 LRLLGLGHPEDNIRDVSTYHLYTRYKKYN---PTLRQLTRSYLSRGLEAPRTAVKDATAA 151
+ L+ LGH E V +H++ + +K N P R+ + + R + A D A
Sbjct: 605 IALVKLGHDETINEGVRRFHIFIKDRKTNILPPDTRKASYLAVMRTVTTSSRAGYD--AL 662
Query: 152 MDLYLKVAEFWEEELLNETDSSECDED 178
+ +Y + AE E+ + + SS D+D
Sbjct: 663 LKIYRETAEAQEKSRILGSLSSCLDKD 689
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,859,367
Number of Sequences: 37544
Number of extensions: 176043
Number of successful extensions: 390
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 8
length of query: 183
length of database: 14,793,348
effective HSP length: 78
effective length of query: 105
effective length of database: 11,864,916
effective search space: 1245816180
effective search space used: 1245816180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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