GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001830-TA|BGIBMGA001830-PA|IPR006055|Exonuclease,
IPR013520|Exonuclease, RNase T and DNA polymerase III,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (183 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-14|CAA19458.1|  269|Caenorhabditis elegans Hypothetical...    70   1e-12
AL132860-30|CAB60505.2|  386|Caenorhabditis elegans Hypothetical...    33   0.16 
Z81562-5|CAB04555.1|  408|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z68337-4|CAA92744.1|  364|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AL023828-14|CAA19458.1|  269|Caenorhabditis elegans Hypothetical
           protein Y17G7B.12 protein.
          Length = 269

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 44/171 (25%), Positives = 87/171 (50%), Gaps = 9/171 (5%)

Query: 1   MADAVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQ 60
           +   ++IDC+ +G     G  +  A ++IVNE    VY+  + P   +++D+RT   GI+
Sbjct: 99  LTKVIAIDCEYVGAGMG-GTTDILARISIVNELGKIVYDKFVKPTE-KVTDFRTAVSGIR 156

Query: 61  AQDLSRGLHIKVVRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYK 120
            +++ + +     +  VS+++   +++G+ V    R+L L H     RD +   +     
Sbjct: 157 PENMIKAIPFDRAQTEVSKLIDGRIVIGHAVHNDFRVLKLNHIRKLTRDTAKCTILKNMA 216

Query: 121 KYN--PTLRQLTRSYLSRGLEAPR---TAVKDATAAMDLYLKVAEFWEEEL 166
            ++  P+L++L +  L  G+E  R    ++ DA  A+ LY  V + WE E+
Sbjct: 217 NHHGTPSLKKLAKEVL--GIEIQRGEHDSITDARVALRLYEAVKKQWEAEI 265


>AL132860-30|CAB60505.2|  386|Caenorhabditis elegans Hypothetical
           protein Y56A3A.28 protein.
          Length = 386

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 74  RQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRDVSTYHLYTRYKKYNPTLRQLTRSY 133
           R  V+  ++N ++ G  + RS R +   HPED +  + T   YT  +K   ++R    + 
Sbjct: 282 RHIVNHHIRNAVIKGPIMRRS-RTIPRYHPEDQVESIPTTMKYTVNEK---SVRVSVAAT 337

Query: 134 LSRGLEAPRTAVKDATAAMDLYLKVAEFWEEELLNETDSSECDED 178
             R L    T +  A A+      V E  EEE++ E    + D++
Sbjct: 338 RRRQLREDHTYISAAAASTSNEPYVEE--EEEIIEEAPIGDEDDE 380


>Z81562-5|CAB04555.1|  408|Caenorhabditis elegans Hypothetical
           protein K03D7.8 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 14  VESSEG-IRNYPASVAIVNEDKICVYNAVINPRNLQISDYRTRFHGIQAQDLSRGLHIKV 72
           VE  +G +  Y  S+  + E  + V N + N   + +  Y  R    Q           +
Sbjct: 18  VELVQGKLEVYEISLLYIKEMALLVLNVLNNITFISLFIYNRRRKS-QPSSYRSEFDTLI 76

Query: 73  VRQAVSRILKNCLLVGYDVSRSLRLLGLGHPEDNIRD 109
             Q     +  C LV YD+S +LRL+G  H ED + +
Sbjct: 77  FNQMY--YVSGCSLVFYDISFALRLVG-EHKEDTLSE 110


>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical protein
            F31E3.4 protein.
          Length = 1131

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 10/130 (7%)

Query: 46   NLQISDYRTRFHGIQAQDLS-------RGLHIKVVRQAVSRILKNCLLVGYDVSRSLRLL 98
            ++++ DY T+F GI   DL           H +++ +    I +    VG+ +     +L
Sbjct: 959  DVEVVDYLTKFSGIVKADLCPTTSEKYLTTHKRLLLRMHVLIQRGVTFVGHALHNDFTVL 1018

Query: 99   GLGHPEDNIRDVSTYHLYTRYKKYNPTLRQLTRSYLSRGLE-APRTAVKDATAAMDLYLK 157
             +   E  I D  T  L     +   +L+ L +  L   ++     +V DA  A+ LY K
Sbjct: 1019 NVHVAESQIIDTVT--LMRLGTQRMLSLQFLVKEILGETIQMEAHDSVVDARYALKLYRK 1076

Query: 158  VAEFWEEELL 167
              E  E+ LL
Sbjct: 1077 YLEIKEQGLL 1086


>Z68337-4|CAA92744.1|  364|Caenorhabditis elegans Hypothetical
           protein M7.7 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 39  NAVINPRNLQISDYRTRFHGIQAQDLSRGLHIKVVRQAVSRILKNCLLVGYDVSRSL 95
           N   NP NL  +    RFHG    D  R L ++   + +S + K+  L  + V+ SL
Sbjct: 72  NTAFNPNNLPGASPFLRFHGYGGIDGFRWLAMERCGENLSDLRKDTPLGRFSVTTSL 128


>U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical
           protein T05C1.4b protein.
          Length = 1163

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 139 EAPRTAVKDATAAMDLYLKVAEFWEEELLNETDSSECDED 178
           E P   +++AT++   Y  ++E +E  +L    S ECDED
Sbjct: 707 EKPDDLLREATSS---YSIMSEMYEGPMLQAGTSRECDED 743


>U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical
           protein T05C1.4a protein.
          Length = 1185

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 139 EAPRTAVKDATAAMDLYLKVAEFWEEELLNETDSSECDED 178
           E P   +++AT++   Y  ++E +E  +L    S ECDED
Sbjct: 707 EKPDDLLREATSS---YSIMSEMYEGPMLQAGTSRECDED 743


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,259,303
Number of Sequences: 27539
Number of extensions: 156352
Number of successful extensions: 338
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 7
length of query: 183
length of database: 12,573,161
effective HSP length: 77
effective length of query: 106
effective length of database: 10,452,658
effective search space: 1107981748
effective search space used: 1107981748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)