BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001829-TA|BGIBMGA001829-PA|IPR006055|Exonuclease, IPR013520|Exonuclease, RNase T and DNA polymerase III, IPR012337|Polynucleotidyl transferase, Ribonuclease H fold (224 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 124 8e-30 SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 71 2e-13 SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 54 1e-08 SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 33 0.034 SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 29 0.42 SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 29 0.42 SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 0.97 SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.3 SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 2.2 SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 2.2 SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 27 2.2 SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 3.9 SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 5.1 SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 25 6.8 SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.8 SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 6.8 SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 6.8 SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 6.8 SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 9.0 SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 9.0 SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 9.0 >SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 260 Score = 124 bits (300), Expect = 8e-30 Identities = 71/193 (36%), Positives = 111/193 (57%), Gaps = 7/193 (3%) Query: 27 NANWQKLLAS--NLLMDHKEEKQAPKEQYTGKFR-RNRKTEQKINKSKDLQPTVRKFETL 83 ++NW+KL + E+K + +++Y + +N + E K ++KF Sbjct: 3 SSNWEKLKKKLDSAKSGRVEKKHSNEKKYLKSVKGKNNENENSYIVDKKRMNELKKFAKE 62 Query: 84 NLEPDQA--DGHEDDIALNDRKQAKNKITKFIAMDCEMVGIGYDGNDHMLARVSLVNKFG 141 N P+ D + D + RK + K+IAMDCEMVG+ D + +LARVS+VN G Sbjct: 63 NDIPESQVLDAYGVDASKLTRKTNLETLGKYIAMDCEMVGVADDMS--VLARVSIVNYHG 120 Query: 142 DCIYDKFVKPREEVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVIRGKILVGHSLKNDL 201 +YD +V+P+E+V D+RT VSG++ + + F VQ EVA ++ ++LVGH++ NDL Sbjct: 121 HVVYDTYVRPKEKVTDWRTWVSGVKSFHMRDAPSFEKVQAEVAKILDNRVLVGHAVHNDL 180 Query: 202 NVLFLSHPKRNIR 214 VL LSHP+R IR Sbjct: 181 KVLLLSHPRRMIR 193 >SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|||Manual Length = 623 Score = 70.5 bits (165), Expect = 2e-13 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 6/115 (5%) Query: 111 KFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDL 170 K +A+DCEMV N +ARV++V+ + IYD+FVKP V DY T SGI +E L Sbjct: 267 KILAIDCEMVRTE---NGLEIARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEKL 323 Query: 171 INGED-FSIVQKEVADVI-RGKILVGHSLKNDLNVLFLSHPKRNIRTHLSTNHSK 223 N S VQ + + +L+GHSL +DLN L +HP I T NH++ Sbjct: 324 RNVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHP-HIIDTANIYNHTR 377 >SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 540 Score = 54.4 bits (125), Expect = 1e-08 Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 10/114 (8%) Query: 114 AMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRK----ED 169 A+DCE+ Y N LAR+++V K I D F+KP+ ++ T SGI E Sbjct: 384 ALDCELC---YTTNGMELARLTVVAK-ESIIMDVFIKPKGKILSLNTRFSGIHDAKELES 439 Query: 170 LINGEDFSIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRTHLSTNHSK 223 I + I KE+ + + IL+GH L+NDLN + L H KR I T L H++ Sbjct: 440 GITMDQMYIKIKELG-MNKNTILIGHGLENDLNAMRLIH-KRVIDTALLFTHAR 491 >SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 1115 Score = 33.1 bits (72), Expect = 0.034 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 11/94 (11%) Query: 131 LARVSLVNKFGDC----IYDKFVKPREEVKDYRTIVSGIRKEDL-INGEDFSIVQKEVAD 185 LARVS++ G D +V ++V DY T SGI DL + +++V +VA Sbjct: 919 LARVSVLRGEGPNKGLPFIDDYVATDDKVTDYLTEYSGIHPGDLDPDRSPYNVVPLKVAY 978 Query: 186 ------VIRGKILVGHSLKNDLNVLFLSHPKRNI 213 V G I VGH L+ D ++ L P + Sbjct: 979 KKLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQV 1012 >SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 598 Score = 29.5 bits (63), Expect = 0.42 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 36 SNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHED 95 S+ MDH ++KQA + + K RK + ++ + VR+ N+E G Sbjct: 520 SSTEMDH-QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVEVIGKGGERK 578 Query: 96 DIALNDRK 103 +A N K Sbjct: 579 KVASNSNK 586 >SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosaccharomyces pombe|chr 2|||Manual Length = 294 Score = 29.5 bits (63), Expect = 0.42 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 56 KFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNK-ITKFIA 114 +FR +K E+K ++KDL R +++ P + + + L D + KNK I K Sbjct: 163 QFRERKKIEKK-QEAKDLSLKNRAALDIDILPPSSSDKDKALLLLDNELGKNKFIRKLDY 221 Query: 115 MDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFV---KPREEVKDYRTIVSGIRKEDLI 171 M A S K D KFV K R E + + T ++ E ++ Sbjct: 222 RRTLMPSSRTFSTFAKFAETSFAKK--DPFARKFVPSEKLRSEQRKFPT--ENLKGEKIL 277 Query: 172 NGEDFSIVQKEVAD 185 S+V EV+D Sbjct: 278 EDNSVSLVNYEVSD 291 >SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1687 Score = 28.3 bits (60), Expect = 0.97 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Query: 50 KEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKI 109 K++Y K RN +++ K + +PT + + NL + +EDDI DRKQ + Sbjct: 812 KQEYLTK--RNFESKLKSSAVSSRKPTFNEVKPANLLAEDLSDNEDDI---DRKQGLFSL 866 Query: 110 TK 111 K Sbjct: 867 AK 868 >SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 3227 Score = 27.9 bits (59), Expect = 1.3 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 71 KDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCEMVGIGYDGNDHM 130 +DL +FE + E + + G+ED++ N+ + +N T F AM+ D +DH+ Sbjct: 1934 EDLDNQGEEFEWED-EDNASSGYEDELDYNEDEVGENDSTTFEAMENAFTETS-DNDDHL 1991 >SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 1085 Score = 27.1 bits (57), Expect = 2.2 Identities = 10/41 (24%), Positives = 24/41 (58%) Query: 5 SHKRKRTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEE 45 SH + +A+ D + +++ G+ + +WQ L S+ ++H + Sbjct: 92 SHPQLVSANGDDSSLINVEGISSTDWQFTLESDDTIEHSPQ 132 >SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schizosaccharomyces pombe|chr 2|||Manual Length = 695 Score = 27.1 bits (57), Expect = 2.2 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Query: 43 KEEKQAPKEQYTGKFRR-NRKTEQKINKSKD 72 K EKQ K++Y ++ RK ++K+ K D Sbjct: 326 KREKQRSKDEYASLYKEYTRKEQEKLRKQND 356 >SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Schizosaccharomyces pombe|chr 1|||Manual Length = 775 Score = 27.1 bits (57), Expect = 2.2 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 40 MDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLE 86 ++ K++++ P EQ FR + QK K QP + +TLN+E Sbjct: 19 LERKKKRRVPPEQRRRVFRACKHCRQKKIKCNGGQPCI-SCKTLNIE 64 >SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 295 Score = 26.2 bits (55), Expect = 3.9 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 41 DHKEEKQAPKEQYTGKFR-RNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDI 97 + +EE P+ T K R++ +K K + TV ++ NLE D+ DG D+ Sbjct: 86 EEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVDEDSENLEGDEEDGSFSDL 143 >SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosaccharomyces pombe|chr 2|||Manual Length = 1172 Score = 25.8 bits (54), Expect = 5.1 Identities = 17/64 (26%), Positives = 29/64 (45%) Query: 27 NANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLE 86 NAN+ +L L H+ + + FR +Q + KDL+ + + + L L+ Sbjct: 710 NANFHRLEQEIQLKQHELTLLIEQRETDSSFRLLSDYQQYKDDVKDLKQRLPELDRLILQ 769 Query: 87 PDQA 90 DQA Sbjct: 770 SDQA 773 >SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 578 Score = 25.4 bits (53), Expect = 6.8 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 41 DHKEEKQAPKEQYTGKFRRNRKTEQKINK-SKDLQPTVRKFETLNLEPDQ 89 D EE + K +G + K E+K + K+ +PTV+K + P Q Sbjct: 40 DENEESLSRKRDSSGATVGDLKQEEKESMPKKEPEPTVKKIRGSGMPPPQ 89 >SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual Length = 684 Score = 25.4 bits (53), Expect = 6.8 Identities = 12/30 (40%), Positives = 16/30 (53%) Query: 13 SDDHNQTVSLRGLINANWQKLLASNLLMDH 42 SDD N + + +A+WQKLL L H Sbjct: 254 SDDENISRHSKSYYDASWQKLLEFGLDRSH 283 >SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 407 Score = 25.4 bits (53), Expect = 6.8 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 29 NWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPD 88 N +K L + KE+ +A + GK +N K+ +I+++ +P+ R+ + + D Sbjct: 173 NTRKKLQKPIEKPKKEKIEATPKIDGGKRLKNEKSSAEISQTSKQRPS-RRSARVRMATD 231 Query: 89 QADGHEDDIALNDRKQAKNKI 109 A I + +K AK ++ Sbjct: 232 NAQKSPSPIP-SPKKTAKKRV 251 >SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 3655 Score = 25.4 bits (53), Expect = 6.8 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 5/55 (9%) Query: 45 EKQAPKEQYTGKFRRNRKTEQKINKSKDLQP-----TVRKFETLNLEPDQADGHE 94 +KQ G R NKSKDL P +V +F + N P D E Sbjct: 3050 KKQQAANVLRGNSRLRENDSSSDNKSKDLSPSGSFSSVSQFNSKNGSPSSIDSSE 3104 >SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 2104 Score = 25.4 bits (53), Expect = 6.8 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 27 NANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINK-----SKDLQPTVRKFE 81 NA Q L + L + +E Q ++ R NR E+K+++ +K + R F+ Sbjct: 1822 NAQSQLLSLTAQLQEVREANQTLRKDQDTLLRENRNLERKLHEVSEQLNKKFDSSARPFD 1881 Query: 82 TLNLEPD 88 + +E + Sbjct: 1882 EIEMEKE 1888 >SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1184 Score = 25.0 bits (52), Expect = 9.0 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 9/105 (8%) Query: 44 EEKQAPKEQ--YTGKF-RRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALN 100 EEK+ KE+ Y + R + +Q I + + P + ET EP + E++ Sbjct: 746 EEKRLQKERAKYAKQMSRESAHADQAIANTGPVAPPYFEHET---EPSHYEEEEEEEPEE 802 Query: 101 DRKQAKNKITKFIAMDCEMVGIGYD---GNDHMLARVSLVNKFGD 142 R+++ + + E Y GND ++ R +VN FG+ Sbjct: 803 RREESSHFSESSGNNEFEETEQEYTHGYGNDVLVQRTDVVNNFGE 847 >SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 544 Score = 25.0 bits (52), Expect = 9.0 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 43 KEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDR 102 K EK+ + + K R K K K K+L+ + E + L+ Q E D L ++ Sbjct: 99 KREKERQQREQEKKLREQEKIAAK--KMKELEKLEK--ERIRLQEQQRRKEERDQKLREK 154 Query: 103 KQAK 106 ++A+ Sbjct: 155 EEAQ 158 >SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces pombe|chr 3|||Manual Length = 587 Score = 25.0 bits (52), Expect = 9.0 Identities = 12/39 (30%), Positives = 18/39 (46%) Query: 31 QKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINK 69 QKL +++ H+E +P QY RR E + K Sbjct: 116 QKLRTGDVVPHHRERSPSPPPQYDNHGRRLNTREIRYKK 154 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.316 0.133 0.377 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,056,254 Number of Sequences: 5004 Number of extensions: 43904 Number of successful extensions: 153 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 138 Number of HSP's gapped (non-prelim): 22 length of query: 224 length of database: 2,362,478 effective HSP length: 70 effective length of query: 154 effective length of database: 2,012,198 effective search space: 309878492 effective search space used: 309878492 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits) S2: 52 (25.0 bits)
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