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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001829-TA|BGIBMGA001829-PA|IPR006055|Exonuclease,
IPR013520|Exonuclease, RNase T and DNA polymerase III,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...   124   8e-30
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    71   2e-13
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    54   1e-08
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    33   0.034
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    29   0.42 
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    29   0.42 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   0.97 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   1.3  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.2  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    27   2.2  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   2.2  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    26   3.9  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   5.1  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   6.8  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.8  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   6.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   6.8  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   9.0  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   9.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   9.0  

>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score =  124 bits (300), Expect = 8e-30
 Identities = 71/193 (36%), Positives = 111/193 (57%), Gaps = 7/193 (3%)

Query: 27  NANWQKLLAS--NLLMDHKEEKQAPKEQYTGKFR-RNRKTEQKINKSKDLQPTVRKFETL 83
           ++NW+KL     +      E+K + +++Y    + +N + E      K     ++KF   
Sbjct: 3   SSNWEKLKKKLDSAKSGRVEKKHSNEKKYLKSVKGKNNENENSYIVDKKRMNELKKFAKE 62

Query: 84  NLEPDQA--DGHEDDIALNDRKQAKNKITKFIAMDCEMVGIGYDGNDHMLARVSLVNKFG 141
           N  P+    D +  D +   RK     + K+IAMDCEMVG+  D +  +LARVS+VN  G
Sbjct: 63  NDIPESQVLDAYGVDASKLTRKTNLETLGKYIAMDCEMVGVADDMS--VLARVSIVNYHG 120

Query: 142 DCIYDKFVKPREEVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVIRGKILVGHSLKNDL 201
             +YD +V+P+E+V D+RT VSG++   + +   F  VQ EVA ++  ++LVGH++ NDL
Sbjct: 121 HVVYDTYVRPKEKVTDWRTWVSGVKSFHMRDAPSFEKVQAEVAKILDNRVLVGHAVHNDL 180

Query: 202 NVLFLSHPKRNIR 214
            VL LSHP+R IR
Sbjct: 181 KVLLLSHPRRMIR 193


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 6/115 (5%)

Query: 111 KFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDL 170
           K +A+DCEMV      N   +ARV++V+   + IYD+FVKP   V DY T  SGI +E L
Sbjct: 267 KILAIDCEMVRTE---NGLEIARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEKL 323

Query: 171 INGED-FSIVQKEVADVI-RGKILVGHSLKNDLNVLFLSHPKRNIRTHLSTNHSK 223
            N     S VQ  +   +    +L+GHSL +DLN L  +HP   I T    NH++
Sbjct: 324 RNVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHP-HIIDTANIYNHTR 377


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 10/114 (8%)

Query: 114 AMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRK----ED 169
           A+DCE+    Y  N   LAR+++V K    I D F+KP+ ++    T  SGI      E 
Sbjct: 384 ALDCELC---YTTNGMELARLTVVAK-ESIIMDVFIKPKGKILSLNTRFSGIHDAKELES 439

Query: 170 LINGEDFSIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRTHLSTNHSK 223
            I  +   I  KE+  + +  IL+GH L+NDLN + L H KR I T L   H++
Sbjct: 440 GITMDQMYIKIKELG-MNKNTILIGHGLENDLNAMRLIH-KRVIDTALLFTHAR 491


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 33.1 bits (72), Expect = 0.034
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 131  LARVSLVNKFGDC----IYDKFVKPREEVKDYRTIVSGIRKEDL-INGEDFSIVQKEVAD 185
            LARVS++   G        D +V   ++V DY T  SGI   DL  +   +++V  +VA 
Sbjct: 919  LARVSVLRGEGPNKGLPFIDDYVATDDKVTDYLTEYSGIHPGDLDPDRSPYNVVPLKVAY 978

Query: 186  ------VIRGKILVGHSLKNDLNVLFLSHPKRNI 213
                  V  G I VGH L+ D  ++ L  P   +
Sbjct: 979  KKLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQV 1012


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 36  SNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHED 95
           S+  MDH ++KQA + +   K    RK   +  ++   +  VR+    N+E     G   
Sbjct: 520 SSTEMDH-QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVEVIGKGGERK 578

Query: 96  DIALNDRK 103
            +A N  K
Sbjct: 579 KVASNSNK 586


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 56  KFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNK-ITKFIA 114
           +FR  +K E+K  ++KDL    R    +++ P  +   +  + L D +  KNK I K   
Sbjct: 163 QFRERKKIEKK-QEAKDLSLKNRAALDIDILPPSSSDKDKALLLLDNELGKNKFIRKLDY 221

Query: 115 MDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFV---KPREEVKDYRTIVSGIRKEDLI 171
               M            A  S   K  D    KFV   K R E + + T    ++ E ++
Sbjct: 222 RRTLMPSSRTFSTFAKFAETSFAKK--DPFARKFVPSEKLRSEQRKFPT--ENLKGEKIL 277

Query: 172 NGEDFSIVQKEVAD 185
                S+V  EV+D
Sbjct: 278 EDNSVSLVNYEVSD 291


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 50  KEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKI 109
           K++Y  K  RN +++ K +     +PT  + +  NL  +    +EDDI   DRKQ    +
Sbjct: 812 KQEYLTK--RNFESKLKSSAVSSRKPTFNEVKPANLLAEDLSDNEDDI---DRKQGLFSL 866

Query: 110 TK 111
            K
Sbjct: 867 AK 868


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 71   KDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCEMVGIGYDGNDHM 130
            +DL     +FE  + E + + G+ED++  N+ +  +N  T F AM+        D +DH+
Sbjct: 1934 EDLDNQGEEFEWED-EDNASSGYEDELDYNEDEVGENDSTTFEAMENAFTETS-DNDDHL 1991


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/41 (24%), Positives = 24/41 (58%)

Query: 5   SHKRKRTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEE 45
           SH +  +A+ D +  +++ G+ + +WQ  L S+  ++H  +
Sbjct: 92  SHPQLVSANGDDSSLINVEGISSTDWQFTLESDDTIEHSPQ 132


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 43  KEEKQAPKEQYTGKFRR-NRKTEQKINKSKD 72
           K EKQ  K++Y   ++   RK ++K+ K  D
Sbjct: 326 KREKQRSKDEYASLYKEYTRKEQEKLRKQND 356


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
          Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 40 MDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLE 86
          ++ K++++ P EQ    FR  +   QK  K    QP +   +TLN+E
Sbjct: 19 LERKKKRRVPPEQRRRVFRACKHCRQKKIKCNGGQPCI-SCKTLNIE 64


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 41  DHKEEKQAPKEQYTGKFR-RNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDI 97
           + +EE   P+   T K   R++      +K K  + TV   ++ NLE D+ DG   D+
Sbjct: 86  EEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVDEDSENLEGDEEDGSFSDL 143


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/64 (26%), Positives = 29/64 (45%)

Query: 27  NANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLE 86
           NAN+ +L     L  H+      + +    FR     +Q  +  KDL+  + + + L L+
Sbjct: 710 NANFHRLEQEIQLKQHELTLLIEQRETDSSFRLLSDYQQYKDDVKDLKQRLPELDRLILQ 769

Query: 87  PDQA 90
            DQA
Sbjct: 770 SDQA 773


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 41 DHKEEKQAPKEQYTGKFRRNRKTEQKINK-SKDLQPTVRKFETLNLEPDQ 89
          D  EE  + K   +G    + K E+K +   K+ +PTV+K     + P Q
Sbjct: 40 DENEESLSRKRDSSGATVGDLKQEEKESMPKKEPEPTVKKIRGSGMPPPQ 89


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 13  SDDHNQTVSLRGLINANWQKLLASNLLMDH 42
           SDD N +   +   +A+WQKLL   L   H
Sbjct: 254 SDDENISRHSKSYYDASWQKLLEFGLDRSH 283


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 29  NWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPD 88
           N +K L   +    KE+ +A  +   GK  +N K+  +I+++   +P+ R+   + +  D
Sbjct: 173 NTRKKLQKPIEKPKKEKIEATPKIDGGKRLKNEKSSAEISQTSKQRPS-RRSARVRMATD 231

Query: 89  QADGHEDDIALNDRKQAKNKI 109
            A      I  + +K AK ++
Sbjct: 232 NAQKSPSPIP-SPKKTAKKRV 251


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 45   EKQAPKEQYTGKFRRNRKTEQKINKSKDLQP-----TVRKFETLNLEPDQADGHE 94
            +KQ       G  R         NKSKDL P     +V +F + N  P   D  E
Sbjct: 3050 KKQQAANVLRGNSRLRENDSSSDNKSKDLSPSGSFSSVSQFNSKNGSPSSIDSSE 3104


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 27   NANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINK-----SKDLQPTVRKFE 81
            NA  Q L  +  L + +E  Q  ++      R NR  E+K+++     +K    + R F+
Sbjct: 1822 NAQSQLLSLTAQLQEVREANQTLRKDQDTLLRENRNLERKLHEVSEQLNKKFDSSARPFD 1881

Query: 82   TLNLEPD 88
             + +E +
Sbjct: 1882 EIEMEKE 1888


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 44  EEKQAPKEQ--YTGKF-RRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALN 100
           EEK+  KE+  Y  +  R +   +Q I  +  + P   + ET   EP   +  E++    
Sbjct: 746 EEKRLQKERAKYAKQMSRESAHADQAIANTGPVAPPYFEHET---EPSHYEEEEEEEPEE 802

Query: 101 DRKQAKNKITKFIAMDCEMVGIGYD---GNDHMLARVSLVNKFGD 142
            R+++ +        + E     Y    GND ++ R  +VN FG+
Sbjct: 803 RREESSHFSESSGNNEFEETEQEYTHGYGNDVLVQRTDVVNNFGE 847


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 43  KEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDR 102
           K EK+  + +   K R   K   K  K K+L+   +  E + L+  Q    E D  L ++
Sbjct: 99  KREKERQQREQEKKLREQEKIAAK--KMKELEKLEK--ERIRLQEQQRRKEERDQKLREK 154

Query: 103 KQAK 106
           ++A+
Sbjct: 155 EEAQ 158


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 31  QKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINK 69
           QKL   +++  H+E   +P  QY    RR    E +  K
Sbjct: 116 QKLRTGDVVPHHRERSPSPPPQYDNHGRRLNTREIRYKK 154


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,056,254
Number of Sequences: 5004
Number of extensions: 43904
Number of successful extensions: 153
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 22
length of query: 224
length of database: 2,362,478
effective HSP length: 70
effective length of query: 154
effective length of database: 2,012,198
effective search space: 309878492
effective search space used: 309878492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)

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