Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001829-TA|BGIBMGA001829-PA|IPR006055|Exonuclease,
IPR013520|Exonuclease, RNase T and DNA polymerase III,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(224 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 124 8e-30
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 71 2e-13
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 54 1e-08
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 33 0.034
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 29 0.42
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 29 0.42
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 0.97
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 2.2
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 2.2
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 27 2.2
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 3.9
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 5.1
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 25 6.8
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.8
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 6.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 6.8
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 6.8
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 9.0
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 9.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 9.0
>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 124 bits (300), Expect = 8e-30
Identities = 71/193 (36%), Positives = 111/193 (57%), Gaps = 7/193 (3%)
Query: 27 NANWQKLLAS--NLLMDHKEEKQAPKEQYTGKFR-RNRKTEQKINKSKDLQPTVRKFETL 83
++NW+KL + E+K + +++Y + +N + E K ++KF
Sbjct: 3 SSNWEKLKKKLDSAKSGRVEKKHSNEKKYLKSVKGKNNENENSYIVDKKRMNELKKFAKE 62
Query: 84 NLEPDQA--DGHEDDIALNDRKQAKNKITKFIAMDCEMVGIGYDGNDHMLARVSLVNKFG 141
N P+ D + D + RK + K+IAMDCEMVG+ D + +LARVS+VN G
Sbjct: 63 NDIPESQVLDAYGVDASKLTRKTNLETLGKYIAMDCEMVGVADDMS--VLARVSIVNYHG 120
Query: 142 DCIYDKFVKPREEVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVIRGKILVGHSLKNDL 201
+YD +V+P+E+V D+RT VSG++ + + F VQ EVA ++ ++LVGH++ NDL
Sbjct: 121 HVVYDTYVRPKEKVTDWRTWVSGVKSFHMRDAPSFEKVQAEVAKILDNRVLVGHAVHNDL 180
Query: 202 NVLFLSHPKRNIR 214
VL LSHP+R IR
Sbjct: 181 KVLLLSHPRRMIR 193
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 70.5 bits (165), Expect = 2e-13
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 111 KFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDL 170
K +A+DCEMV N +ARV++V+ + IYD+FVKP V DY T SGI +E L
Sbjct: 267 KILAIDCEMVRTE---NGLEIARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEKL 323
Query: 171 INGED-FSIVQKEVADVI-RGKILVGHSLKNDLNVLFLSHPKRNIRTHLSTNHSK 223
N S VQ + + +L+GHSL +DLN L +HP I T NH++
Sbjct: 324 RNVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHP-HIIDTANIYNHTR 377
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 54.4 bits (125), Expect = 1e-08
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 114 AMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRK----ED 169
A+DCE+ Y N LAR+++V K I D F+KP+ ++ T SGI E
Sbjct: 384 ALDCELC---YTTNGMELARLTVVAK-ESIIMDVFIKPKGKILSLNTRFSGIHDAKELES 439
Query: 170 LINGEDFSIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRTHLSTNHSK 223
I + I KE+ + + IL+GH L+NDLN + L H KR I T L H++
Sbjct: 440 GITMDQMYIKIKELG-MNKNTILIGHGLENDLNAMRLIH-KRVIDTALLFTHAR 491
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1115
Score = 33.1 bits (72), Expect = 0.034
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 131 LARVSLVNKFGDC----IYDKFVKPREEVKDYRTIVSGIRKEDL-INGEDFSIVQKEVAD 185
LARVS++ G D +V ++V DY T SGI DL + +++V +VA
Sbjct: 919 LARVSVLRGEGPNKGLPFIDDYVATDDKVTDYLTEYSGIHPGDLDPDRSPYNVVPLKVAY 978
Query: 186 ------VIRGKILVGHSLKNDLNVLFLSHPKRNI 213
V G I VGH L+ D ++ L P +
Sbjct: 979 KKLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQV 1012
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 29.5 bits (63), Expect = 0.42
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 36 SNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHED 95
S+ MDH ++KQA + + K RK + ++ + VR+ N+E G
Sbjct: 520 SSTEMDH-QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVEVIGKGGERK 578
Query: 96 DIALNDRK 103
+A N K
Sbjct: 579 KVASNSNK 586
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 29.5 bits (63), Expect = 0.42
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 9/134 (6%)
Query: 56 KFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNK-ITKFIA 114
+FR +K E+K ++KDL R +++ P + + + L D + KNK I K
Sbjct: 163 QFRERKKIEKK-QEAKDLSLKNRAALDIDILPPSSSDKDKALLLLDNELGKNKFIRKLDY 221
Query: 115 MDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFV---KPREEVKDYRTIVSGIRKEDLI 171
M A S K D KFV K R E + + T ++ E ++
Sbjct: 222 RRTLMPSSRTFSTFAKFAETSFAKK--DPFARKFVPSEKLRSEQRKFPT--ENLKGEKIL 277
Query: 172 NGEDFSIVQKEVAD 185
S+V EV+D
Sbjct: 278 EDNSVSLVNYEVSD 291
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 0.97
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 50 KEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKI 109
K++Y K RN +++ K + +PT + + NL + +EDDI DRKQ +
Sbjct: 812 KQEYLTK--RNFESKLKSSAVSSRKPTFNEVKPANLLAEDLSDNEDDI---DRKQGLFSL 866
Query: 110 TK 111
K
Sbjct: 867 AK 868
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 71 KDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCEMVGIGYDGNDHM 130
+DL +FE + E + + G+ED++ N+ + +N T F AM+ D +DH+
Sbjct: 1934 EDLDNQGEEFEWED-EDNASSGYEDELDYNEDEVGENDSTTFEAMENAFTETS-DNDDHL 1991
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 5 SHKRKRTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEE 45
SH + +A+ D + +++ G+ + +WQ L S+ ++H +
Sbjct: 92 SHPQLVSANGDDSSLINVEGISSTDWQFTLESDDTIEHSPQ 132
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 43 KEEKQAPKEQYTGKFRR-NRKTEQKINKSKD 72
K EKQ K++Y ++ RK ++K+ K D
Sbjct: 326 KREKQRSKDEYASLYKEYTRKEQEKLRKQND 356
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 40 MDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLE 86
++ K++++ P EQ FR + QK K QP + +TLN+E
Sbjct: 19 LERKKKRRVPPEQRRRVFRACKHCRQKKIKCNGGQPCI-SCKTLNIE 64
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 3.9
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 41 DHKEEKQAPKEQYTGKFR-RNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDI 97
+ +EE P+ T K R++ +K K + TV ++ NLE D+ DG D+
Sbjct: 86 EEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVDEDSENLEGDEEDGSFSDL 143
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 27 NANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLE 86
NAN+ +L L H+ + + FR +Q + KDL+ + + + L L+
Sbjct: 710 NANFHRLEQEIQLKQHELTLLIEQRETDSSFRLLSDYQQYKDDVKDLKQRLPELDRLILQ 769
Query: 87 PDQA 90
DQA
Sbjct: 770 SDQA 773
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 41 DHKEEKQAPKEQYTGKFRRNRKTEQKINK-SKDLQPTVRKFETLNLEPDQ 89
D EE + K +G + K E+K + K+ +PTV+K + P Q
Sbjct: 40 DENEESLSRKRDSSGATVGDLKQEEKESMPKKEPEPTVKKIRGSGMPPPQ 89
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 13 SDDHNQTVSLRGLINANWQKLLASNLLMDH 42
SDD N + + +A+WQKLL L H
Sbjct: 254 SDDENISRHSKSYYDASWQKLLEFGLDRSH 283
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 6.8
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 29 NWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPD 88
N +K L + KE+ +A + GK +N K+ +I+++ +P+ R+ + + D
Sbjct: 173 NTRKKLQKPIEKPKKEKIEATPKIDGGKRLKNEKSSAEISQTSKQRPS-RRSARVRMATD 231
Query: 89 QADGHEDDIALNDRKQAKNKI 109
A I + +K AK ++
Sbjct: 232 NAQKSPSPIP-SPKKTAKKRV 251
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 45 EKQAPKEQYTGKFRRNRKTEQKINKSKDLQP-----TVRKFETLNLEPDQADGHE 94
+KQ G R NKSKDL P +V +F + N P D E
Sbjct: 3050 KKQQAANVLRGNSRLRENDSSSDNKSKDLSPSGSFSSVSQFNSKNGSPSSIDSSE 3104
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 27 NANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINK-----SKDLQPTVRKFE 81
NA Q L + L + +E Q ++ R NR E+K+++ +K + R F+
Sbjct: 1822 NAQSQLLSLTAQLQEVREANQTLRKDQDTLLRENRNLERKLHEVSEQLNKKFDSSARPFD 1881
Query: 82 TLNLEPD 88
+ +E +
Sbjct: 1882 EIEMEKE 1888
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 9.0
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 44 EEKQAPKEQ--YTGKF-RRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALN 100
EEK+ KE+ Y + R + +Q I + + P + ET EP + E++
Sbjct: 746 EEKRLQKERAKYAKQMSRESAHADQAIANTGPVAPPYFEHET---EPSHYEEEEEEEPEE 802
Query: 101 DRKQAKNKITKFIAMDCEMVGIGYD---GNDHMLARVSLVNKFGD 142
R+++ + + E Y GND ++ R +VN FG+
Sbjct: 803 RREESSHFSESSGNNEFEETEQEYTHGYGNDVLVQRTDVVNNFGE 847
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 9.0
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 43 KEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDR 102
K EK+ + + K R K K K K+L+ + E + L+ Q E D L ++
Sbjct: 99 KREKERQQREQEKKLREQEKIAAK--KMKELEKLEK--ERIRLQEQQRRKEERDQKLREK 154
Query: 103 KQAK 106
++A+
Sbjct: 155 EEAQ 158
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 31 QKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINK 69
QKL +++ H+E +P QY RR E + K
Sbjct: 116 QKLRTGDVVPHHRERSPSPPPQYDNHGRRLNTREIRYKK 154
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,056,254
Number of Sequences: 5004
Number of extensions: 43904
Number of successful extensions: 153
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 22
length of query: 224
length of database: 2,362,478
effective HSP length: 70
effective length of query: 154
effective length of database: 2,012,198
effective search space: 309878492
effective search space used: 309878492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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