Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001829-TA|BGIBMGA001829-PA|IPR006055|Exonuclease,
IPR013520|Exonuclease, RNase T and DNA polymerase III,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(224 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0490 - 17724878-17725045,17725264-17725342,17725434-177254... 96 2e-20
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848... 68 5e-12
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447... 62 3e-10
02_05_0476 + 29337124-29337158,29338460-29338669,29338760-293389... 32 0.33
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 31 0.76
03_04_0085 - 17182662-17182963,17183044-17183101,17183564-171836... 30 1.7
01_06_0086 + 26293452-26294030,26295309-26295353,26295543-26296175 30 1.7
01_01_0045 - 330630-331274 29 2.3
06_03_1392 - 29842084-29842176,29842743-29842817,29842906-298429... 29 3.1
08_02_0277 - 15226062-15226169,15227075-15227203,15227416-152275... 28 5.3
12_02_0663 + 21653536-21653541,21654027-21654212,21654316-216543... 28 7.1
10_05_0042 + 8481227-8481764,8482291-8482418,8483349-8483933,848... 28 7.1
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 27 9.3
03_05_0803 + 27829438-27829461,27829558-27829643,27829960-278300... 27 9.3
>08_02_0490 -
17724878-17725045,17725264-17725342,17725434-17725498,
17725569-17725657,17725750-17725858,17725969-17726047,
17727247-17727512
Length = 284
Score = 95.9 bits (228), Expect = 2e-20
Identities = 40/78 (51%), Positives = 61/78 (78%)
Query: 137 VNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVIRGKILVGHS 196
VN +G+ +YD++ +P E + DYRT +SGIR + + +DF +VQK+VA++I+G+ILVGH+
Sbjct: 116 VNSWGNVVYDEYTRPVERIVDYRTHISGIRPKHMNKAKDFWVVQKDVAELIKGRILVGHA 175
Query: 197 LKNDLNVLFLSHPKRNIR 214
L +DL VL L HPK++IR
Sbjct: 176 LHHDLKVLLLGHPKKDIR 193
>04_04_1390 -
33184233-33184478,33184601-33184705,33184783-33184890,
33184967-33185101,33185263-33185363,33185495-33185564,
33185642-33185758,33186001-33186138,33186371-33186439,
33186556-33186645,33186758-33186940,33187020-33187052
Length = 464
Score = 68.1 bits (159), Expect = 5e-12
Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 11/107 (10%)
Query: 106 KNKITKF-----IAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRT 160
+ KIT F +A+DCEMV + +DG + L RV +VN + D+ V P + V DYRT
Sbjct: 132 EGKITNFMKSTMLAIDCEMV-LCHDGTE-ALVRVCVVNSNLEVKLDELVNPLKAVADYRT 189
Query: 161 IVSGIRKEDLINGEDFSI--VQKEVADVI-RGKILVGHSLKNDLNVL 204
++G+ K+DL G S+ VQK + ++ +GKIL+GHSL DL+ L
Sbjct: 190 SITGLSKKDL-KGVTCSLVDVQKSLKKLLSKGKILIGHSLSKDLHAL 235
>12_01_0552 +
4469009-4469080,4470052-4470117,4470808-4470941,
4471073-4471179,4471695-4471802,4471879-4471949,
4472126-4472185,4472264-4472319,4472663-4472723,
4472809-4473076,4473174-4473355,4473444-4473736,
4474048-4474138
Length = 522
Score = 62.5 bits (145), Expect = 3e-10
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 9/100 (9%)
Query: 113 IAMDCEM--VGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDL 170
+A+DCEM G++ L RV+LV+ G+ + DK VKP + DY T SGI E L
Sbjct: 180 LALDCEMCVTAAGFE-----LTRVTLVDIKGEVVLDKLVKPANPITDYNTRFSGITAEML 234
Query: 171 IN-GEDFSIVQKEVADVI-RGKILVGHSLKNDLNVLFLSH 208
+ +Q+E ++ + +LVGHSL+NDL L +SH
Sbjct: 235 ADVTTTLQEIQEEFVGLVHKETVLVGHSLENDLMALRISH 274
>02_05_0476 +
29337124-29337158,29338460-29338669,29338760-29338936,
29338937-29339165
Length = 216
Score = 32.3 bits (70), Expect = 0.33
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 152 REEVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVI---------------RGKILVGHS 196
RE + R ++GIR E L + +VQ+ + D++ R +ILVGH
Sbjct: 5 RESSETLRYEMTGIRPEYLRDAMPLKLVQRRIQDILCNGEPLWKIRPRSSGRARILVGHG 64
Query: 197 LKNDLNVLFLSHPKRNIR 214
L+++L L L +P IR
Sbjct: 65 LEHELERLGLEYPAFMIR 82
>03_05_0226 -
22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 40 MDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIAL 99
M+ +EEK PK Q K ++KI KD P ++ N++ + G +
Sbjct: 1 MELEEEKDPPKHQSKIKMNSEEIKKRKIRLGKDQDPEKKEMSGKNIKSIKETGTKGQSKE 60
Query: 100 NDRKQAKNK 108
+K++K++
Sbjct: 61 LQKKESKSR 69
>03_04_0085 -
17182662-17182963,17183044-17183101,17183564-17183638,
17183730-17183864,17183986-17184165,17184315-17184365,
17184537-17184637,17185562-17185620,17185701-17185816,
17186668-17186853,17187337-17187399,17187440-17187521,
17188221-17188312,17189153-17189296,17190056-17190136,
17190815-17190898,17191465-17191566,17191922-17192017,
17192239-17192299,17192418-17192521
Length = 723
Score = 29.9 bits (64), Expect = 1.7
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 97 IALNDRKQAKNKITKF---IAMDCEMVGIGYDG---NDHMLARVSLVNKFGDCIYDKFVK 150
+ L +RK A++K++KF I + M+ I DG +++M +L K D VK
Sbjct: 143 LKLKNRKAAESKLSKFVEDIIVPPRMIDIIVDGEVNDEYMKTLETLSRKIKFIEVDAMVK 202
Query: 151 PREEVKDYRTIVSGIRKEDLINGEDFSIVQK 181
+ +KD + V +R++ + +F ++QK
Sbjct: 203 SSKALKDVQPEVERLRQKAVSKIFEF-VIQK 232
>01_06_0086 + 26293452-26294030,26295309-26295353,26295543-26296175
Length = 418
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 115 MDCEMVGIGYDGNDH-----MLAR-VSLVNKFGDCIYDKFVKP-REEVKDYRTIVSG 164
++C + G+ DH ++ R V+LVNKF DC+ D++ P R +V +++V G
Sbjct: 340 LECHLHGVAGWHGDHRGFELVVDRDVALVNKFDDCLADEYPVPVRWKVHHNKSMVKG 396
>01_01_0045 - 330630-331274
Length = 214
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 5 SHKRKRTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTE 64
S K+KR S+DH+Q + Q A++L+ + + +K+ K K R+ +K E
Sbjct: 73 SDKKKRKRSEDHHQAATHVKQEQEAQQVAFAADLVAEEETDKETSK-----KNRKKKKHE 127
Query: 65 QKINKSKDLQ 74
+ ++D++
Sbjct: 128 SQQENARDVK 137
>06_03_1392 -
29842084-29842176,29842743-29842817,29842906-29842998,
29843125-29843145,29843537-29843616,29843768-29843856,
29844034-29844071,29844168-29844261,29844548-29844640,
29844929-29845002
Length = 249
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 58 RRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNK-ITKFIAM 115
RR+R+ E+ +K +D + ++ FE + + + E L+DRKQ+ K + ++A+
Sbjct: 39 RRSRQLEELTDKMRDCKRLIKDFERVVKDMAGSTDPETARMLHDRKQSMIKELNSYVAL 97
>08_02_0277 -
15226062-15226169,15227075-15227203,15227416-15227583,
15227665-15228123,15228865-15229008
Length = 335
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Query: 21 SLRGLINANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKF 80
S++ L N +L +++ AP++ N++TE +NKS + +
Sbjct: 46 SIKALPLLNQPRLYSTSTFQRFGFSSSAPQQDDKAA---NKQTEDGVNKSTQSEASNETN 102
Query: 81 ETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCE 118
+ E G +D + ++R++ K T F D E
Sbjct: 103 SSPGTENASQAGSQDSVPQSNRRRRGTKRTAFSDSDTE 140
>12_02_0663 +
21653536-21653541,21654027-21654212,21654316-21654393,
21654581-21654694,21654799-21654865,21654954-21655015,
21655123-21655262,21655552-21655678,21655758-21655872,
21656111-21656199,21656593-21656733,21657067-21657192,
21657655-21657714,21658285-21658443
Length = 489
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 29 NWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPD 88
N ++L +S L + E + Q + + R + E +I+ DLQ ++K ETL E +
Sbjct: 402 NQEELQSSRLKQELANELDLVRNQLSAEEARASQLENEIS---DLQQRLQKMETLEKESE 458
Query: 89 ----QADGHEDDIALNDRKQAKNK 108
+ D DD + ++ +K
Sbjct: 459 SLRLEKDAESDDSSSGSNQRPADK 482
>10_05_0042 +
8481227-8481764,8482291-8482418,8483349-8483933,
8484033-8484061,8485221-8485612,8486038-8486454,
8486587-8486668,8487116-8487686
Length = 913
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 10 RTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEE 45
RTA +DH+ RG N + + ++L+DH ++
Sbjct: 624 RTAHNDHDAYCVARGYFNELINRSMIQSILLDHNDD 659
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 36 SNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHED 95
SN L+ HK+ + PK+ N K S++++PT+ ET E D++ E
Sbjct: 774 SNALLHHKQT-EPPKDPKDHTASTNNSHVSKEGSSRNVKPTLTSEETHTAE-DKSFSFEV 831
Query: 96 DIALNDRKQA 105
LN ++A
Sbjct: 832 GAPLNITEKA 841
>03_05_0803 +
27829438-27829461,27829558-27829643,27829960-27830088,
27830806-27830925,27831007-27831132,27831349-27831433,
27831538-27831648,27832215-27832308,27832448-27832728,
27832840-27832947,27833163-27833284,27833825-27834035,
27834149-27834376,27834591-27834680
Length = 604
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 36 SNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQP-TVRKFETLNLEPDQADGHE 94
SN + D K + + ++QY + R + + N++ D QP V K +T + D H+
Sbjct: 490 SNEIADKKRKLEMLEKQYHDELRMEYEGKTFSNRTADNQPDVVDKSDTKEADDHMEDSHK 549
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,241,265
Number of Sequences: 37544
Number of extensions: 247037
Number of successful extensions: 570
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 15
length of query: 224
length of database: 14,793,348
effective HSP length: 79
effective length of query: 145
effective length of database: 11,827,372
effective search space: 1714968940
effective search space used: 1714968940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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