Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001829-TA|BGIBMGA001829-PA|IPR006055|Exonuclease,
IPR013520|Exonuclease, RNase T and DNA polymerase III,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(224 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31090| Best HMM Match : No HMM Matches (HMM E-Value=.) 147 6e-36
SB_3340| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0051) 63 2e-10
SB_36642| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25) 33 0.19
SB_44905| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_9469| Best HMM Match : IRK (HMM E-Value=0) 31 1.0
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1) 30 1.3
SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8) 29 2.3
SB_33557| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_35415| Best HMM Match : BRF1 (HMM E-Value=4.4) 29 3.1
SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 29 3.1
SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_35759| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_21688| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4) 28 5.4
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41) 28 5.4
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2) 28 5.4
SB_344| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12) 28 7.1
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 28 7.1
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_45622| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_39770| Best HMM Match : TolA (HMM E-Value=0.33) 27 9.4
SB_26581| Best HMM Match : SspP (HMM E-Value=2.7) 27 9.4
SB_48151| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_31090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 147 bits (357), Expect = 6e-36
Identities = 71/153 (46%), Positives = 103/153 (67%), Gaps = 4/153 (2%)
Query: 62 KTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCEMVG 121
K K K++ + ++ + L + + ++ I+ N NK+TK IA+DCE VG
Sbjct: 75 KNSDKSEKTRKPKKFLKSLKNLKEKEAKKIKDKEGISFN----TNNKLTKKIAIDCEFVG 130
Query: 122 IGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDLINGEDFSIVQK 181
+G +G HMLARVS+VN G +YDK+V P E V DYRT VSGIR DL + DF VQK
Sbjct: 131 VGSEGAKHMLARVSIVNSHGRVVYDKYVAPEERVIDYRTAVSGIRSLDLKDAPDFKTVQK 190
Query: 182 EVADVIRGKILVGHSLKNDLNVLFLSHPKRNIR 214
EV+D+++G+I++GH+LK+DL VLFL+HP+++IR
Sbjct: 191 EVSDILQGRIVIGHALKHDLQVLFLAHPRKDIR 223
>SB_3340| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0051)
Length = 342
Score = 63.3 bits (147), Expect = 2e-10
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
Query: 104 QAKNKITKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVS 163
QA ++T A+DCEM +G + L RVS+V + +YD FVKP + DY T S
Sbjct: 242 QASKELTPMFAIDCEMCTTS-EGLE--LTRVSVVEEDCTLLYDTFVKPDRPIIDYNTKYS 298
Query: 164 GIRKEDLINGEDFSI--VQKEVADVI-RGKILVGHSLKNDLNVL 204
GI E +++G + VQKE+ +I +G I+ GHSL+ DL L
Sbjct: 299 GITAE-MLDGVTVKLADVQKELQAIIPQGAIVAGHSLECDLKAL 341
>SB_36642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 33.5 bits (73), Expect = 0.14
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 27 NANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKT-EQKINKSKDLQPTVRKFETLNL 85
N + K+ N +D GK RR+ K E + D QP ++ FET ++
Sbjct: 358 NKHIHKVQTGNEQLDQIVNNHTQLFSGIGKARRDGKDIEIHLPMQDDAQPVIQIFETSSI 417
Query: 86 EPDQADGHEDDIALNDRKQAK 106
PD+A +D+ L K K
Sbjct: 418 PPDRATKEKDERVLVQPKPKK 438
>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
Length = 1597
Score = 33.1 bits (72), Expect = 0.19
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 131 LARVSLVNKFGDC----IYDKFVKPREEVKDYRTIVSGIRKEDL---INGEDFSIVQK-- 181
+AR+++V G D ++ E+V DY T SGI+ DL ++ + + ++
Sbjct: 393 VARITVVRGEGSLKGVPFIDDYISTSEQVVDYLTKFSGIKPGDLDATMSSKHLTTLKTTY 452
Query: 182 -EVADVIRGKI-LVGHSLKNDLNVLFLSHPKRNIRTHLSTNHSKR 224
++ ++ K+ VGH LK D V+ + PK + + H R
Sbjct: 453 LKIRALVDRKVKFVGHGLKKDFRVINILVPKGQVFDTVGLFHLPR 497
>SB_44905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 31 QKLLASNLLMDHKEEKQAPKEQYTGKFRRN--RKTEQKINKSKDLQPTVRKFETLNLEPD 88
+K + LL D EE++APK T + R++ +KTE + S+D R ET + P
Sbjct: 88 EKFASYKLLSDDDEEEEAPKPSQTDRKRKHLRQKTETSSDSSED---EGRGAETSRVSPG 144
Query: 89 QADGHEDD 96
ED+
Sbjct: 145 GESESEDE 152
>SB_9469| Best HMM Match : IRK (HMM E-Value=0)
Length = 520
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 45 EKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQ 104
E+++P E ++ + + Q +NKS++ P V + DQ D +DD+ L DRK
Sbjct: 436 EQESPDEVFSKEIQEI-SIRQDMNKSENGSPIVPR--------DQRDDPQDDVQLRDRKA 486
Query: 105 AKNKI 109
+ +K+
Sbjct: 487 SNSKM 491
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 30.7 bits (66), Expect = 1.0
Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 18/191 (9%)
Query: 6 HKRKRTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKT-- 63
HK ++ N L + ++ A N +D K A + + R KT
Sbjct: 80 HKLEKDNEAQRNNIARLESDMQDKEDQIDALNRELDGKGTSDADLRKEVIELRTKNKTLE 139
Query: 64 ---EQKINKSKDLQPTVR----KFETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAM- 115
++ ++ KDLQ + K E L + D DD+ N A N I K
Sbjct: 140 RDVDELLDDKKDLQEELADLRPKVEKLQTQLDATTTQRDDLK-NALADANNTILKLKEEL 198
Query: 116 -DCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDY----RTIVSGIRKEDL 170
+ EM + + L + LV K + I D + +E D R +VS K DL
Sbjct: 199 NNAEMRASQQEKANSSLGK--LVKKHENTIADLMQQLKEAEADVESLRRELVSVNAKNDL 256
Query: 171 INGEDFSIVQK 181
+N E +V+K
Sbjct: 257 LNQEKKDLVKK 267
>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
Length = 700
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 10 RTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEEKQAPKEQ---YTGKFRRNRKTEQK 66
R +DD R + A +K+ S L KE+ A +EQ Y FRR R+ +++
Sbjct: 575 RVYADDFTSERQDRERVQAEKEKI--SEQLKAVKEQVLALEEQLRIYEEDFRRERQEKER 632
Query: 67 INKSKDLQPTVRKFETLNLEPDQA 90
+ + L P R E D++
Sbjct: 633 LQRQLQLSPGARAMYVTQREDDES 656
>SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)
Length = 234
Score = 29.5 bits (63), Expect = 2.3
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 138 NKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVIR-GKILVGHS 196
N FGD D+F + E+ D V R +D+I+ + QK+ D R G G S
Sbjct: 90 NHFGDLTDDEFKSYKGELDDESNDVMKDR-DDVIDDDVNDDTQKDEEDDPRSGYRRSGIS 148
Query: 197 LKNDLNVLFLSHPKRNIRTHLSTNHSKR 224
++ N +N RTH + NHSKR
Sbjct: 149 GESHENRKNEKKELKN-RTHTNRNHSKR 175
>SB_33557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 43 KEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNL-EPDQADGHEDD 96
K +K +PK+ + +K I + + L+P++ K+ TLNL D++DG +D
Sbjct: 2 KNDKNSPKKFAPKDNSKEKKDNVIIKRKQKLEPSL-KWRTLNLLGNDESDGGSED 55
>SB_35415| Best HMM Match : BRF1 (HMM E-Value=4.4)
Length = 408
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 46 KQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLN-LEPDQAD 91
+ A +E YT F N+ I KSK L + +K +N L+ D D
Sbjct: 353 RSAKREYYTNSFEENKNNPSAIWKSKTLNGSNKKCREINKLKIDDQD 399
>SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 8 RKRTASDDHNQTVSLRGLINANWQKLLASNLLMDHKE-EKQAPKEQYTGKFRRNRKTEQK 66
+ R + + + G + W+ + + E+Q +E K R Q+
Sbjct: 79 KNRKTENGRTERQRMEGQSDREWKNRKTETRRTERQRMEEQKDREWKNRKTENGRTVRQR 138
Query: 67 INKSKDLQPTVRKFETLNLEPDQADGHED 95
+ + KD + RK E E + +G +D
Sbjct: 139 MEEQKDREWKDRKIENRRTERQRMEGQKD 167
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 31 QKLLASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQA 90
Q+ L + KE+++ K+Q K R +K +++ K K + K E + ++
Sbjct: 352 QERLEKQAEKEKKEKERLEKKQREEKDRLEKKEKKEEEKRKKEEEINAKIEE-KKKREEK 410
Query: 91 DGHEDDIALNDRKQAKNKITKF 112
E++ + ++QAKN F
Sbjct: 411 KKQEEEEKMKKKEQAKNNFVNF 432
>SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1444
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 3 ENSHKRKRTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEEKQAPKE---QYTGKFRR 59
E H+R++ DD + L Q+ L L + +Q KE T K R
Sbjct: 462 EQMHQRQQQRLDDQARIFHRDRLALEEQQQALLQKLQAQEERSRQIEKELERGSTNKRSR 521
Query: 60 NRKTEQKINKSK 71
RKT + +N S+
Sbjct: 522 GRKTRRPVNSSE 533
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 39 LMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQAD 91
L EE++ KE+ K R+ +++ + K+L+ RK E L +Q +
Sbjct: 1437 LQKENEEERLRKEEEERKMEEERRRDEQARRDKELEDQKRKDEERRLIMEQQE 1489
>SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 42 HKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDI---- 97
+KE++Q KE+ R R +++ +K+ + ++ E LN E ++ D + +
Sbjct: 499 NKEKEQLNKEKEQLNKERKRLNKERKRVNKERERLNKEKERLNKETERLDKTRERLNKER 558
Query: 98 -ALNDRKQAKNKITK 111
LN +K+ NK+ K
Sbjct: 559 KRLNKKKERLNKVRK 573
Score = 28.3 bits (60), Expect = 5.4
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 3 ENSHKRKRTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRK 62
E +K ++ A+ D + +N +++ ++ KE K+A KE R N++
Sbjct: 426 ERLNKERKRANKDTERVNKETERVNKETERVNKERERVN-KERKRANKETE----RVNKE 480
Query: 63 TEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCE 118
TE ++NK ++ +K E LN E +Q + ++ LN ++ NK K + + E
Sbjct: 481 TE-RVNKERER--VNKKKERLNKEKEQLNKEKEQ--LNKERKRLNKERKRVNKERE 531
>SB_35759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 43 KEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQAD 91
++E+ P+ +G+ NRK E+K +K K + ++ + + PDQ D
Sbjct: 17 EDEEDEPRSGISGESNENRKNEKKEHK-KRMHAKIKHSKRMFEVPDQLD 64
>SB_21688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1078
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 20 VSLRGLINANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRK 62
++L+ I+AN QK+ +N+ +P +YT F R+
Sbjct: 649 ITLKATISANPQKVTGTNIRSQSTSAPSSPSGRYTNPFPHQRE 691
>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
Length = 311
Score = 28.3 bits (60), Expect = 5.4
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 3 ENSHKRKRTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRNRK 62
E +K ++ A+ D + +N +++ ++ KE K+A KE R N++
Sbjct: 167 ERLNKERKRANKDTERVNKETERVNKETERVNKERERVN-KERKRANKETE----RVNKE 221
Query: 63 TEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCE 118
TE ++NK ++ +K E LN E +Q + ++ LN ++ NK K + + E
Sbjct: 222 TE-RVNKERER--VNKKKERLNKEKEQLNKEKEQ--LNKERKRLNKERKRVNKERE 272
>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
Length = 1682
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/88 (23%), Positives = 38/88 (43%)
Query: 1 MVENSHKRKRTASDDHNQTVSLRGLINANWQKLLASNLLMDHKEEKQAPKEQYTGKFRRN 60
M + KR + S+ ++ + + + LL D K ++ K + + RR
Sbjct: 686 MAKGKRKRVKEMSESEDENEEEPDTPSKSKGRRKIRKLLTDEKLGEETKKARRLEEERRQ 745
Query: 61 RKTEQKINKSKDLQPTVRKFETLNLEPD 88
R E+ N S+D+ K ++L LE D
Sbjct: 746 RLLERTQNLSEDMPSMDWKVDSLVLESD 773
>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
Length = 1167
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 43 KEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHE 94
K E+ +E K RK +K +K ++ V+ ++L EP++ADG E
Sbjct: 64 KPEENISREGTKEKIGSKRKVRRK-SKKDSVKENVQTGDSLPEEPEEADGKE 114
>SB_344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 58 RRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITK 111
+R +K E K + SK+ + + + + Q++G ED+ N+ A+NK +K
Sbjct: 294 QREQKAEDKADSSKEADVKMNEPADVAIVRGQSEGAEDE---NENNDAENKASK 344
>SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)
Length = 492
Score = 27.9 bits (59), Expect = 7.1
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 6/114 (5%)
Query: 60 NRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCEM 119
N E + +D++P K +T + + + DG DD + + ++ + C
Sbjct: 230 NEDDEAVPDSEQDIKPRFHKSKTHSQQHEDGDGESDD---GEDMDDDDALSDWNLRKCSA 286
Query: 120 VGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDLING 173
G+ N + R L+ + D P E K+ +V G E ING
Sbjct: 287 AGLDVLAN---VFRDDLLPVLLPILKDTLFHPDWESKESGILVLGAIAEGCING 337
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 42 HKEEKQAPKEQYT--GKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIAL 99
HK K++ E+ T GK + + ++ +KSK+ + E + ++ ++++ +
Sbjct: 415 HKHAKKSKTEEQTDDGKTDKKKSKKKSKDKSKNKGEKSKNKEEESKNKEEKSKNKEEESK 474
Query: 100 NDRKQAKNKITK 111
N +++KNK K
Sbjct: 475 NKEEESKNKEEK 486
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 34 LASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGH 93
L L+MD Q QY+ + + T ++ D PT R + E D+
Sbjct: 708 LKRKLIMDFNTNLQKRVTQYSLQAQIVAYTTSLLDLMGDF-PTTRDAHFMIGEEDEKKSE 766
Query: 94 EDDIALNDRKQAKNKITKFIAMD 116
EDD D K K++ + +++D
Sbjct: 767 EDDDPTPDPKHFKSRPRRMLSVD 789
>SB_45622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 43 KEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPT 76
K+EK K + KF++ +KTE K + K + T
Sbjct: 35 KDEKANEKREKISKFKKPKKTESKRPRGKSMAKT 68
>SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)
Length = 732
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 43 KEEKQAPKEQYTGKFRRNRKTEQKINK--SKDLQP 75
+EE+ P++ +G + ++K E+K NK SK L P
Sbjct: 3 QEERSKPRKANSGNKKESKKKEKKENKKLSKSLDP 37
>SB_26581| Best HMM Match : SspP (HMM E-Value=2.7)
Length = 135
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 34 LASNLLMDHKEEKQAPKEQYTGKFRRNRKTEQKINKSK 71
L + L + KE+K P E Y K ++ +K E+K K+K
Sbjct: 34 LVTRKLAEKKEKKLTPWEAYLNK-KKEKKKERKKQKNK 70
>SB_48151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 78 RKFETLNLEPDQADGHEDDIALNDRKQAKNK 108
R+F+ NL P D ED+ + N R+ AK +
Sbjct: 15 RRFDQTNLRPMAEDSTEDERSNNKRRAAKRQ 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.133 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,528,105
Number of Sequences: 59808
Number of extensions: 303030
Number of successful extensions: 1019
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 996
Number of HSP's gapped (non-prelim): 37
length of query: 224
length of database: 16,821,457
effective HSP length: 80
effective length of query: 144
effective length of database: 12,036,817
effective search space: 1733301648
effective search space used: 1733301648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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