GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001829-TA|BGIBMGA001829-PA|IPR006055|Exonuclease,
IPR013520|Exonuclease, RNase T and DNA polymerase III,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (224 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid transpo...    28   0.19 
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    23   9.6  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   9.6  

>AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid
           transporter Ag_AAT8 protein.
          Length = 636

 Score = 28.3 bits (60), Expect = 0.19
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 140 FGDCI-YDKFVKPREEVKDYRTIVSGIRK-EDLINGEDFSIVQKEVADVIRGKILVGHSL 197
           FG+ I Y  + K R  V    TIV+ I     L+ G     +   +A V  GK  VG+ +
Sbjct: 342 FGNIIMYSSYNKFRHNVYRDATIVTSIDTFTSLLAGCTIFGILGHLAHVT-GKTDVGNVV 400

Query: 198 KNDLNVLFLSHPK 210
           K+D  + F+S+P+
Sbjct: 401 KSDAGLAFISYPE 413


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 41  DHKEEKQAPKEQYTGKFRRNRKTEQK 66
           D    K +PKE Y  K  R  KT ++
Sbjct: 112 DVSPPKLSPKEDYYRKLYRGEKTPER 137


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 46  KQAPKEQYTGKFRRNR 61
           +Q P+EQ TG  RR R
Sbjct: 214 EQPPREQQTGTARRQR 229


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,546
Number of Sequences: 2123
Number of extensions: 8382
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 3
length of query: 224
length of database: 516,269
effective HSP length: 62
effective length of query: 162
effective length of database: 384,643
effective search space: 62312166
effective search space used: 62312166
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)