GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001828-TA|BGIBMGA001828-PA|IPR007087|Zinc finger,
C2H2-type
         (752 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    30   0.051
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    29   0.088
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    27   0.47 
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    27   0.62 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    27   0.62 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   3.3  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    24   3.3  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    23   5.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   7.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   7.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   7.7  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 30.3 bits (65), Expect = 0.051
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 637 MKGNYILHSEGASFTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPA 681
           +K + ++H+    F C  C G F     L+ H    E  A R PA
Sbjct: 234 LKAHVLIHTNEKPFECDKCRGRFRRRHHLVHHKCGGEEEAERAPA 278



 Score = 24.2 bits (50), Expect = 3.3
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 636 YMKGNYILHSEGASFTCVNCNGVFNSIRSLLMHL-VHAEHFAYRPPAECTFRYYLELKHN 694
           ++K +  LH+    + C +C+  F  + +L  HL VH     Y     C+ ++      +
Sbjct: 177 HLKTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRVHTGERPY-GCEHCSMKF-----SD 230

Query: 695 INMLAKNKYVYYSFGRFKCGVC 716
            N L  +  ++ +   F+C  C
Sbjct: 231 SNQLKAHVLIHTNEKPFECDKC 252


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 29.5 bits (63), Expect = 0.088
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 10/95 (10%)

Query: 591 LKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANRA-DIISVYMKGNYILHSE--- 646
           LKC++C   FR   E   H     ++ + +++ ++ + R+ D       G+   +++   
Sbjct: 479 LKCMWCGQSFRSLAEMTSHMQQTQHYTNIISQEQIISWRSSDDAKGGGGGSGSGNNQPPG 538

Query: 647 ------GASFTCVNCNGVFNSIRSLLMHLVHAEHF 675
                  A  TC  C+  F+S++ L  H+V   H+
Sbjct: 539 GPSSHVSAVLTCKVCDQAFSSLKELSNHMVKNSHY 573



 Score = 25.0 bits (52), Expect = 1.9
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 394 LNCRLCKQNIETAEATILHLLDEKHLAMLSDDLYLKMKATSPNGQIPEEWGPKDLSWSKY 453
           L C  CKQ+  +  A   H+ + KH  +      ++ +  +P  QI     P + + S  
Sbjct: 378 LKCVWCKQSFPSLAAMTTHMKEAKHCGVNVPVPPMQSQIINPQPQIT---SPSNTNTSTS 434

Query: 454 LASVGKPVNNRDHVIIE 470
             +  KP ++  +++I+
Sbjct: 435 STNSNKPNSSDLNMLIK 451



 Score = 23.0 bits (47), Expect = 7.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 652 CVNCNGVFNSIRSLLMHLVHAEHFAYRPP 680
           CV C   F S+ ++  H+  A+H     P
Sbjct: 380 CVWCKQSFPSLAAMTTHMKEAKHCGVNVP 408


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 0.47
 Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 15/157 (9%)

Query: 179 VLSLEQLRLR-NPVEKLDRNLCSKLTNMLLKVLPDTSEASIA-EALKIYQET--YDKLCQ 234
           ++ LEQ+ L  N +E L+R     L ++    L     A+IA E  +   E    D    
Sbjct: 115 LIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYN 174

Query: 235 DVSNIDFT--NQTSSVAPIIMSIRDNVYQNFSADANKNTDNDENEQSPEKPKAQTKKY-- 290
            +S++DF   +Q  S+    +++  N   N     +   + D      +  K     +  
Sbjct: 175 SISSLDFNIFDQVGSLGMFHVNMSHNKLINLVVAPSVPFEQDTGLGGLQNIKVLDLSFNN 234

Query: 291 ------RYYGPIEASIVKLLLNH-KLVSLVDDRTGKL 320
                 +++ P+E S+++L L H KL++   D  G +
Sbjct: 235 ITSVAKQFFRPVELSLMQLYLGHNKLLNATKDLFGNM 271


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 26.6 bits (56), Expect = 0.62
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 637 MKGNYILHSEGASFTCVNCNGVFNSIRSLLMHL-VHAEHFAYRPPAECTFRY 687
           +K +   HS    + C++CN  F+   +L  H+  H+    +R P  C  R+
Sbjct: 9   LKTHLRTHSGEKPYRCIDCNKSFSQAANLTAHVRTHSGEKPFRCPV-CDRRF 59


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 26.6 bits (56), Expect = 0.62
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 637 MKGNYILHSEGASFTCVNCNGVFNSIRSLLMHL-VHAEHFAYRPPAECTFRY 687
           +K +   HS    + C++CN  F+   +L  H+  H+    +R P  C  R+
Sbjct: 265 LKTHLRTHSGEKPYRCIDCNKSFSQAANLTAHVRTHSGEKPFRCPV-CDRRF 315


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 3/31 (9%)

Query: 586 NKIEDLKCVYCNFDFRDNREAVKHALSNVYH 616
           NK E   C YCN  F D   AV + +   YH
Sbjct: 466 NKEEGNSCQYCNIAFGD---AVLYTIHMGYH 493


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 194 LDRNLCSKLTNMLLKVLPDTSEASIAEALKIYQETYDKLCQDVSN 238
           +DR  C+   + L +VLPD  ++  A+  +  +E   K+   +S+
Sbjct: 46  MDRGACTPDADELKRVLPDALKSDCAKCSEKQKEMTKKVIHFLSH 90


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 636 YMKGNYILHSEGASFTCVNCNGVFNSIRSLLMHL-VHAEHFAY 677
           ++K +  LH+    + C +C+  F  + +L  HL VH     Y
Sbjct: 24  HLKTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRVHTGERPY 66


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 703 YVYYSFGRFKCGV 715
           Y+ Y+FG+F C V
Sbjct: 143 YICYAFGKFSCKV 155


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 703 YVYYSFGRFKCGV 715
           Y+ Y+FG+F C V
Sbjct: 376 YICYAFGKFSCKV 388


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 703 YVYYSFGRFKCGV 715
           Y+ Y+FG+F C V
Sbjct: 376 YICYAFGKFSCKV 388


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,092
Number of Sequences: 317
Number of extensions: 8414
Number of successful extensions: 31
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 17
length of query: 752
length of database: 114,650
effective HSP length: 62
effective length of query: 690
effective length of database: 94,996
effective search space: 65547240
effective search space used: 65547240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)