Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001828-TA|BGIBMGA001828-PA|IPR007087|Zinc finger,
C2H2-type
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1063 + 30048724-30048753,30049036-30049175,30049282-300493... 33 0.84
02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201... 33 0.84
01_06_1071 - 34289609-34292941 33 0.84
07_01_0124 - 938612-940098,940643-940748 32 1.9
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 31 2.5
08_02_0648 - 19694538-19696569,19697151-19697998 31 3.4
01_06_0028 - 25746250-25746526,25746839-25746975,25747089-257472... 31 3.4
06_03_1332 - 29403320-29407804 30 7.8
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 30 7.8
>03_05_1063 +
30048724-30048753,30049036-30049175,30049282-30049336,
30049419-30049526,30050190-30050288,30050380-30050457,
30050558-30050635,30051875-30051949,30052117-30052217,
30052502-30052527,30053224-30053297,30053358-30053379,
30054108-30054223,30054361-30054618,30054716-30054832,
30055649-30055699,30055859-30056086,30056550-30056648,
30056823-30056999,30057298-30057417
Length = 683
Score = 33.1 bits (72), Expect = 0.84
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 148 KLKRESIDVAEPVILPNMSRRLSALECGEMPVLSLEQLRLRNPVEKLDRNLCSKLTNMLL 207
K E+ID+ + + +E V+ L+QL PV+ L NL KL + LL
Sbjct: 156 KASEEAIDLVTQHLKTKLYSDSEPIESRAEAVVLLKQLNF--PVDSLKSNLLEKLEDCLL 213
Query: 208 KVLPDTSEASIAEALKIYQ 226
+ ++ASI + K ++
Sbjct: 214 NFQKEPTQASIGDISKTFR 232
>02_01_0301 +
2011707-2015423,2016982-2017182,2017670-2017786,
2018030-2018122
Length = 1375
Score = 33.1 bits (72), Expect = 0.84
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 8 ITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKR 67
+ N + V KLD + KH T++I TE++P IQ L LQ K ++ +KR
Sbjct: 243 VQNNFHVIWVCMSHKLD----IRKHTTEVIESLATEETPKIQN-LDTLQRKLKNLLLEKR 297
Query: 68 D 68
+
Sbjct: 298 E 298
>01_06_1071 - 34289609-34292941
Length = 1110
Score = 33.1 bits (72), Expect = 0.84
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 5 VEDITKNISELTVLSFRKLDD---VKKLAKHFTKIINHPITEQSPSIQRYLKN------L 55
+E + ++ +L L KL D ++++ + T++IN E S + + L
Sbjct: 602 IETLPASLVKLYNLQILKLSDCNFLREVPQGITRLINLRHLEASTRLLSRIHGIGSLVCL 661
Query: 56 QETHKRIIFQKRDSVEV-EYIFTTEKKSSLQRQRFNSLPVSE--VPELLKNEFIAVENAR 112
QE + ++ QKR V E E + L + N++P + V L+N+ E+ R
Sbjct: 662 QELEEFVV-QKRSGHNVTELNNMDELQGQLSIRGLNNVPNGQDAVCAKLRNK----EHLR 716
Query: 113 QVHICTDCDVEIELNDEEPLMESLQKHFNLE 143
+H+ D D E ++++ ++E LQ H +L+
Sbjct: 717 TLHLIWDEDCESNPSEQQEVLEGLQPHLDLK 747
>07_01_0124 - 938612-940098,940643-940748
Length = 530
Score = 31.9 bits (69), Expect = 1.9
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 695 INMLAKNKYV-YYSFGRFKCGVCDADIEEGENAKRHVLSPK 734
+N+L K Y YY+ RF+C V +AD + HV+ K
Sbjct: 90 LNILRKEMYRGYYTLDRFRCHVHEADHTKDHEVSNHVIPSK 130
>02_04_0157 + 20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 31.5 bits (68), Expect = 2.5
Identities = 43/212 (20%), Positives = 84/212 (39%), Gaps = 6/212 (2%)
Query: 53 KNLQETHKRIIFQKRDSVEVEYIFTTEKKSSLQRQRFNSLPVSEVPELLKNE----FIAV 108
K ++E R+ +KR V++E + E K Q+ + L +E +LLK E A
Sbjct: 908 KQVEELTWRLQLEKRMRVDMEEAKSQENKKLQQKLQELELQSNETKDLLKREQETAKAAW 967
Query: 109 ENARQV-HICTDCDVEIELNDEEPLMESLQKHFNLEVHLPKLKRESIDVAEPVILPNMSR 167
E A V + D + EL E +++L ++ + + + + A +L +
Sbjct: 968 EKAALVPEVQVDTTLVNELTAENEKLKTLVASLETKIDETEQRFDEVKKAREELLKKATD 1027
Query: 168 RLSALECGEMPVLSLEQLRLRNPVEKLDRNLCSKLTNMLLKVLPDTSEASIAEALKIYQE 227
S + +LSL++ +E + + + + +TS + +
Sbjct: 1028 AESKINGLTNTMLSLQEKLTNMELENQVLRQQALFRSPVRTIPENTSPKATPHGTPPASK 1087
Query: 228 TYDKLCQDVSNIDFTNQTSSVAPIIMSIRDNV 259
Y K Q + F Q SV +I + +N+
Sbjct: 1088 EYGKFAQPRPSF-FERQHESVDALINCVTENI 1118
>08_02_0648 - 19694538-19696569,19697151-19697998
Length = 959
Score = 31.1 bits (67), Expect = 3.4
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 247 SVAPIIMSIRDNVYQNFSADANKNTDNDENEQSPEKPKAQTKKYRYYGPIEASIVKLLLN 306
S +P I+ I ++ N N +D+ + K K Y+ + + + L N
Sbjct: 223 SRSPNIIRILSDILSNIIKTNNTTSDDQKQLMQRIKEYLNRKSLEYHELVNMTR-EFLEN 281
Query: 307 HKLVSLVDDRTGKLAFFCIACEYYTLRFHYDSVLSHVFSETHVHNL--SCIMQSDKHIPF 364
L+DD K A+ I C F ++ S + T + ++ SC + H+ +
Sbjct: 282 KSYFVLIDDVWSKQAWKDIQC-----AFPSNNNASRIMMTTRIQDVAKSCSFPHESHV-Y 335
Query: 365 LMSETTIESIKEMNAKFLSGH 385
M ++ K + K + GH
Sbjct: 336 SMKHLGVDDSKRLFLKRIFGH 356
>01_06_0028 -
25746250-25746526,25746839-25746975,25747089-25747292,
25747747-25747855,25747951-25748081,25748156-25748253,
25748827-25749018,25749075-25749177,25749275-25749445
Length = 473
Score = 31.1 bits (67), Expect = 3.4
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 337 DSVLSHVFSETHVHNLSCIMQSDK-HIPFLMSETTIESIKEMNAKFLSGHNITATASGLN 395
++V +H + E V+ L ++ + + HI + T + +KEMNAK + I +T
Sbjct: 80 NNVWAHCYDELAVYRLIPLLVTLRAHIYY--KSTMVSILKEMNAKLSTAKEIKSTHRISE 137
Query: 396 CRLCKQNIETAEATILHL-LDEKHLAMLSDDLYLK 429
+C+Q+ + L + L++ ML+D LK
Sbjct: 138 VLMCQQSCLYMKTAKLEVGLNKDFRKMLTDHADLK 172
>06_03_1332 - 29403320-29407804
Length = 1494
Score = 29.9 bits (64), Expect = 7.8
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 31 KHFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEKKSSLQRQRFN 90
+HF + N + + S+ + LK LQE + F+ + VE F + L+ +
Sbjct: 775 RHFL-VPNDNLHSEIASVGK-LKCLQELRR---FEVQRQVEA---FALRQLGQLEDLK-G 825
Query: 91 SLPVSEVPELLKNEFIAVENARQVH-ICTDCDVEIELND---EEPLMESLQKHFNL-EVH 145
SL + + E + N ++H + DCD++ D EE ++ESL+ H NL E+H
Sbjct: 826 SLGIYNLENAQAPEEAELSNKSRLHKLILDCDIKRLTKDSLQEEHILESLKPHSNLRELH 885
Query: 146 L 146
+
Sbjct: 886 I 886
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 29.9 bits (64), Expect = 7.8
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 373 SIKEMNAKFLSGHNITATASGLNCRLCKQNIETAEATILHLLDEKHLAMLSDDLYLK 429
+I E+ K + A A L+ CKQ +ET+ ATI LL + M S L +K
Sbjct: 301 TIDELRVKLKASEEAEAQARALH-EECKQQLETSRATIDSLLTDGSKLMDSFSLVVK 356
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.133 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,833,403
Number of Sequences: 37544
Number of extensions: 869949
Number of successful extensions: 2266
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2265
Number of HSP's gapped (non-prelim): 10
length of query: 752
length of database: 14,793,348
effective HSP length: 88
effective length of query: 664
effective length of database: 11,489,476
effective search space: 7629012064
effective search space used: 7629012064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
- SilkBase 1999-2023 -